Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00917 TTTGATGTGGTTTGGTAAAGTAGAATAGAAGCTGAACCGCGCAGGAACCAACCCCAAACCCTTATTCCAGAACTTTCATGTCCATCTTGCCCTCACAAACCCAAGCGGCATCTTCATCCTCTTCTTCTGCGCCATCTCATAACCCTAATTCCCAACATGGAATTGGAAACCCTCTTCCTCCACCCTTCTCTTCTCTTTCCCACCCCATTGACCTCTCTTTCGGATCTTTCCAGATCTCCGATAACCCAGGTTCATCCACTTCAGCTGCTCAAAATTCCGGTGGATCTTCCGGAAAGGTGACAGAATCAGGGTCTCCAAGTGGAGAAATGGTTTCACCTCAGCAAAACGCTAGAACACGTTCTAGGAGTCAAAGGGGAAGACATTCGGGAACGGTTTCTTATCATAGAAATCAACAAGCTCCTGGGTCTGTGAACTCTCATGGAAGTGCTCCTTCAGCAGGGAGAAAAGCTCAGACGGTCAACGGGAATTACTTGCTGAATTTTCAGTATGACCCAATATCCCGATCTCAACCACGTGGTCCTCCTCCTGCCCCTACAACAAGAAGGCATCAGAGGAGGAAGCCGTACAACAAGGATTTGTTTCTGCAGGCGAATTACAAGTTCATGGTGCTAGATTCGGGAAATTATTTGCCTGAGTCAATGGATCCTGATAAAATGTTGCATTGGGAAGATATCATATGTGTGACATATTTGACCCCGTTTTCAGTTCAGTGTCCCATATGTTTGGAGTATCCCTTGTGTCCGCAGATAACTTCATGCGGACATATATTCTGTTTCCCATGTATTCTACAGTACTTAATGGGTGAAGAGGATAACAAAGGTGATAGTTGGAAAAGATGTCCTTTGTGCTTTGTGATGATATCTGCCAAGGATTTATATACTGTCCACATCACAAATGTAAAGCAGTATCGAGTAGGAGATAATGTTGAGTTTACCTTTCTAACCCGGAAAAAGGATTCCTTTACTCTCTCACATAGAAATAAACAAGAGACAAATGTCACATCATGTGGCAATGAAGATATCTGTGATCCGTTTTCTAAGTTCACTCTTACATCAGATGTAGATCTCTCAGTGAGACATGCAATCTCTGATCTAGATGGTTGGCTAGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAGGTATTGGAGTGAGCAAAGGTCTCAAGATGGTGAAAAATCTCCTAAACTTATTGATTGTGGACATCAGATACCATCAACAGTTGCCAATTCTATGGATACTGATGATGAAAACTGTTCTAATGGATCAAGAACTTCTTCTGATTTCCTTGACCAAAATAAGGTTATGATGTTGGATAAGTCAACTGCTAGGGCCTGTTCGGAGCAAAACTTGGATGTGGAAAAAGAATTAATAGAGCAAGAAATGAATTTATCTTCTTTGTATGAGGAGAAAAACCATATTCAAAGGCATTCAGATGGTGTTTTTGAAGATGTGAAGGCAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATTTAATTCTTCATCCTCTGAACATGAAGTGTTTGCTTCACTATTATGGAGTCTATGATATGCTTCCACACAGGATAAGTGGGAGGGTTCTGCAATTGGAGACAGTTACTCAGTCTGAGGCGATGAGGAGGCGGTATCGATTCCTTAGTCATTTTCCATTAACCACAACTTTTCAGCTTTGTGAAGTTGATTTGAGTGAGGTGTTACCTCCTGAAGCACTCGTCCCATTTATGGACGAAATCAAGAAGCGTGCCAATCAGAGGAAGCAGCTTGCGAAAAAGGAACGGAAGGAAAAAATAAAGGCTGAAGCTACTGCTGCTTATTCTCTTCCCATATCATTAAATTATCAGTTTACTTCTCGCGACGATCCTCCAACATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAGCTATATCCTCAAGTCCTCCTGTAGCTGGAGAGAGAAATTCGTTCTCAAATGTTACTAGGCTTGGGTTTGCTGCCGGTCATGATTCTCCATCCTTACAAATTCAAGAAACAAGTGGTCTACATAATCTCAATACGACCCCTGATTCTGTCACAACAGGTTTGAGAAACGGAGAGACACAATCATACTCCAACATTATATCAAGAGCAGAATCTAATATAAGCTCTAATGCACCGAAGACAAATGAGTTGGGGAAGAAAGGAAAGAAACCAAATCGTGTTCTTTTGTCAACAGCTGGTGGTAGGCGTTATTGATGACTTGGCTCCATCTAGCTAGTCCCAAGCCAAACTTTTGCAGATGATTTCAGCGTATTGTTATTAACGCTCAATGGATTGCATGTGTACTCTTTATGGCTTTTTATTACTTGTAGATAGGTAGATAAGTGTGGAAAGAATAAATAATTTCGGCTACAAACAAGCTACCACCATTGAAATTGATTTTAACATCTGCGGCTCTATCGAAATGGGTTGTTAATTTAACAATGAGAATGAGCATTTTAAATTTTAATCATTTGACCCTCTTAATTTAAAAGCAAAAGAGAAGCATAAAATGAGAACTGGTAGTGCAGGTCATTGCTCCTAGTGATATTGAATTCAATTTACTAATGTAAGTAAGATCACGGGTTCTGTCTTGGGTATGGAGAAAATGTGGTTGGATGAAATTTTGTGGTGTTTCTGGTTTTTTATTCTAGAGTGGCTTCACGATGTAGCAGTGTAGTTTATTCTTGTAAGTTTTCATAGTTATGAATAAAGATAAGTTTAGTATTATTG 2813 0.4056 MSILPSQTQAASSSSSSAPSHNPNSQHGIGNPLPPPFSSLSHPIDLSFGSFQISDNPGSSTSAAQNSGGSSGKVTESGSPSGEMVSPQQNARTRSRSQRGRHSGTVSYHRNQQAPGSVNSHGSAPSAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPAPTTRRHQRRKPYNKDLFLQANYKFMVLDSGNYLPESMDPDKMLHWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMGEEDNKGDSWKRCPLCFVMISAKDLYTVHITNVKQYRVGDNVEFTFLTRKKDSFTLSHRNKQETNVTSCGNEDICDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWSEQRSQDGEKSPKLIDCGHQIPSTVANSMDTDDENCSNGSRTSSDFLDQNKVMMLDKSTARACSEQNLDVEKELIEQEMNLSSLYEEKNHIQRHSDGVFEDVKANDSYSFYQAADGQHLILHPLNMKCLLHYYGVYDMLPHRISGRVLQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSEVLPPEALVPFMDEIKKRANQRKQLAKKERKEKIKAEATAAYSLPISLNYQFTSRDDPPTFSMDDFEALGNSAISSSPPVAGERNSFSNVTRLGFAAGHDSPSLQIQETSGLHNLNTTPDSVTTGLRNGETQSYSNIISRAESNISSNAPKTNELGKKGKKPNRVLLSTAGGRRY 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00917 739 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
Pste5g00917 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 294 IPR013083 -
Pste5g00917 739 MobiDBLite consensus disorder prediction 707 739 - -
Pste5g00917 739 SUPERFAMILY RING/U-box 203 273 - -
Pste5g00917 739 MobiDBLite consensus disorder prediction 1 32 - -
Pste5g00917 739 MobiDBLite consensus disorder prediction 1 130 - -
Pste5g00917 739 PANTHER RING FINGER 10 FAMILY MEMBER 55 739 IPR039739 -
Pste5g00917 739 Pfam Zinc finger, C3HC4 type (RING finger) 219 264 IPR018957 GO:0046872
Pste5g00917 739 Coils Coil 576 600 - -
Pste5g00917 739 MobiDBLite consensus disorder prediction 145 169 - -
Pste5g00917 739 FunFam RING finger protein 10 212 279 - -
Pste5g00917 739 CDD RING-HC_RNF10 217 273 - -
Pste5g00917 739 ProSiteProfiles Zinc finger RING-type profile. 219 264 IPR001841 -
Pste5g00917 739 MobiDBLite consensus disorder prediction 43 130 - -
Pste5g00917 739 SMART ring_2 219 264 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00917 Pste-Chr5 5982010 5987820 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00917 66 674 C3H Transcription Factor Family AT3G26730 51.703 0.0 608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00917 5 5982010 5987820 Pste5g00917 5 5982010 5987820 ECH