Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00901 GATACACCCTTCATGTTGAAGCGTTCCATGTCGTTTTCAGGCATCGAGAAGAAGTGCGATGAAGTAAATGGAGATGATGAGTTCTCCGATGATGGGATGTTCAAGTGCGGGGAGAAAAAGAAGAGATTGAATATGAAACAGGTTAAAGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGAAAAATGCAGTTAGCTAAGGCTTTGGGATTGCAACCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATATGAAGTCCTCAAGAAGCAGTTTGAAGCAGTCAAGGCTGATAATGATGTTCTTAAGGTTCAGAACCAGAAACTACAGGCAGAGTTACAAGCTGTTAAAAGTAGGGATTGCTGTGAAGCGGAAATAATCAGCCTTAAGAAAGAAACTGAGGGTTCATGGAGCAAGGGACGTGATATAAATTTAGATTTCTCAAGGACACTAGGTAAAGGTTTGAACAATTCTATATCTTGTCAGAACGGTAAAAACCTACTACCCAATTCGTTTAAGCCCACCAGCATAACCCAGCTCCTTCAAGATGATGGCTTCTGCGACATCTTTCACAACATTGATGCGCAACAGAACTTTTGGCCTTGGTCTGATCAGCAGCACCACCATTTCCATTGACCCTATAAATGATTTTGGGTATTACTGGTACGAGAGGACCAGTTATACAGTTCAATCTTTTTAATTAAGGTTTTTCTTATTTATTTATTTCTTTGCAGTAGATTGGTGTAAAAAGTTTGAACAAAAACAAATTAATTAAATCTATTAGAGTCATGAGGAGTCGGTGGACTTTGAGC 857 0.3967 DTPFMLKRSMSFSGIEKKCDEVNGDDEFSDDGMFKCGEKKKRLNMKQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDVLKVQNQKLQAELQAVKSRDCCEAEIISLKKETEGSWSKGRDINLDFSRTLGKGLNNSISCQNGKNLLPNSFKPTSITQLLQDDGFCDIFHNIDAQQNFWPWSDQQHHHFH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00901 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 154 IPR045224 GO:0003700
Pste5g00901 226 Pfam Homeobox associated leucine zipper 94 133 IPR003106 GO:0006355|GO:0043565
Pste5g00901 226 PRINTS Lambda-repressor HTH signature 65 74 IPR000047 GO:0003677
Pste5g00901 226 PRINTS Lambda-repressor HTH signature 74 90 IPR000047 GO:0003677
Pste5g00901 226 Coils Coil 86 134 - -
Pste5g00901 226 Pfam Homeodomain 39 92 IPR001356 GO:0003677
Pste5g00901 226 CDD homeodomain 39 95 IPR001356 GO:0003677
Pste5g00901 226 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Pste5g00901 226 FunFam Homeobox-leucine zipper protein ATHB-13 30 98 - -
Pste5g00901 226 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Pste5g00901 226 Gene3D - 38 100 - -
Pste5g00901 226 SUPERFAMILY Homeodomain-like 31 96 IPR009057 -
Pste5g00901 226 SMART HOX_1 37 98 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00901 Pste-Chr5 5863505 5865248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00901 4 219 Homeobox Transcription Factor Family AT3G01220 47.845 9.86e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste5g00901 Homeodomain 1.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00901 5 5863505 5865248 Pste5g00901 5 5863505 5865248 ECH
Pste9g00614 9 3062844 3065879 Pste5g00901 5 5863505 5865248 PCT