Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00894 ATGTCTACCCGAAGATCCAGAGGGTCTACAAGGATCTCCGATGACCAAATCATCGAACTTGTTTCCAAATTGCGCCAACTTGTTCCTGAGATTCGCAATAGGCGATCTGACAAGGTTTCAGCGTCCAAGGTCCTACAAGAGACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGACTTGAGTGAACGACTGTCTCAGTTGTTGACCACAATTGATGCTGATAGTGCTGAAGCTGGAATCATTAGGAGCCTACTTAATCAATGA 270 0.4593 MSTRRSRGSTRISDDQIIELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00894 89 Pfam Helix-loop-helix DNA-binding domain 19 56 IPR011598 GO:0046983
Pste5g00894 89 Gene3D - 4 80 IPR036638 GO:0046983
Pste5g00894 89 FunFam Transcription factor ILI6 3 84 - -
Pste5g00894 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 55 IPR011598 GO:0046983
Pste5g00894 89 PANTHER TRANSCRIPTION FACTOR PRE 1 87 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pste5g00894 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 74 IPR036638 GO:0046983
Pste5g00894 89 Coils Coil 52 72 - -
Pste5g00894 89 CDD bHLH_AtPRE_like 8 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00894 Pste-Chr5 5783069 5784538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00894 9 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 3.13e-35 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g00894 HLH 4e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00894 5 5783069 5784538 Pste5g00894 5 5783069 5784538 ECH
Pste1g00969 1 3052336 3053743 Pste5g00894 5 5783069 5784538 ECH
Pste9g00626 9 3141335 3144105 Pste5g00894 5 5783069 5784538 PCT