Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00881 GGTAAAGAGGGTTAGAAAATTAAAAGAGAAGGAGATATCACCACCACACACATAGAGAGAGGAAAACGACCTATATTTCCTTGGGAGCTTAAGGGGCTACAAAATTAGAAGGACAAGTATAAAGGCGGTGAAATAAAAGAGAAAGACAAGGAGACATGGGAAGACCACCTTGTTGTGACAAAGGAGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATATTGGTGTCTTATATACAGGAACATGGTCCTGGCAATTGGAGAGCAGTTCCTACCAGGACAGGGTTGTCAAGATGCAGTAAGAGCTGCAGACTTAGATGGACAAATTACCTGAGACCAGGAATTAAACGTGGCAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCAATAGCTTCTTACCTTCCACAGAGAACAGATAACGACATAAAGAACTATTGGAACACCCATTTGAGAAAGAAGCTGAATAAGTTGCAAGCCGGTTGTGAAGGAAGCTTGGGAGAAGGGTTTTCAGCCTCAAGGCAAATTCCTAGGGGTCAGTGGGAAAGAAGGCTACAAACTGATATCCAAATGGCAAAGCAAGCTCTCAGTGAAGCTCTTTCACCAGAGAAGCCATCTTGTTTATCTGGATCAAACTCGCACCCTTCAGATAGTAGCAGCTCTTTTTCTTCCAGCAAACCAACACAATCTTTGTGCTATGCTTCGAGTGCTGAGAACATAGCTCGCATGCTGAAGGGTTGGATGAAAAACCCTCCAAAGTCTTCAAGAACTAACTCGTCCGTGACTCAGAATTCCTTCAACAATTTAGCTGCAGCAGGTGCTGATACTGCTTCTAGTGGAGCAAAGGGAGTAAAGGGAGCAAGCAGTGCTGAGTTGTCGGAGAATTTTGAATCCTTGTTTGATTTTGACCAGTCTTTGGAGTCCTCAAACTCTGATCAGTTCTCTCGGTCCTTATCACCTGAGGCCACCGTTTTGCAAGATGAAAGCAAACCTTATATTGGTGCAGAAATAATGCCCTTCTCTCTGCTTGAGAAATGGCTTCTTGATGAGGCTGGTTGCCAAGAGAAAGTTGGTTGTGGGGATGCCAAGTTTTTCTAA 1133 0.4378 MGRPPCCDKGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTRTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLNKLQAGCEGSLGEGFSASRQIPRGQWERRLQTDIQMAKQALSEALSPEKPSCLSGSNSHPSDSSSSFSSSKPTQSLCYASSAENIARMLKGWMKNPPKSSRTNSSVTQNSFNNLAAAGADTASSGAKGVKGASSAELSENFESLFDFDQSLESSNSDQFSRSLSPEATVLQDESKPYIGAEIMPFSLLEKWLLDEAGCQEKVGCGDAKFF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00881 325 FunFam MYB-related transcription factor 12 65 - -
Pste5g00881 325 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pste5g00881 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Pste5g00881 325 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Pste5g00881 325 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pste5g00881 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Pste5g00881 325 CDD SANT 68 111 IPR001005 -
Pste5g00881 325 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pste5g00881 325 CDD SANT 15 60 IPR001005 -
Pste5g00881 325 MobiDBLite consensus disorder prediction 164 187 - -
Pste5g00881 325 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pste5g00881 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 242 - -
Pste5g00881 325 FunFam Transcription factor MYB30 67 125 - -
Pste5g00881 325 Gene3D - 67 124 - -
Pste5g00881 325 Gene3D - 12 65 - -
Pste5g00881 325 MobiDBLite consensus disorder prediction 160 187 - -
Pste5g00881 325 SMART sant 65 113 IPR001005 -
Pste5g00881 325 SMART sant 12 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00881 Pste-Chr5 5695095 5696654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00881 1 322 MYB Transcription Factor Family AT5G62470 52.078 6.36e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g00881 Myb_DNA-binding 3.8e-16 CL0123