Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00879 ATGAGGAGAGTGATTGTGGTAAGCCCTCAGCCTGCAAGATGCCCGAATAACTCAATAATGAGACCTGTGAGGGTGGTAACATATGGAGAGTGCCAAAGGAATCAAGCTGCACGGCTAGGAGGACATGTTCTGGATGGCTGTAACGACTTCATAGCCAGTGGGGAAGAAGGAACTGCTGCTGCTCTTACTTGTGCTGCATGTGGATGCCATAGGAACTTCCACAGAAGGGAGATACAGATAACAGTTGTCTGTGACTGCTCTTCTCATCCTACCAACAATGGAGCGTGA 288 0.4896 MRRVIVVSPQPARCPNNSIMRPVRVVTYGECQRNQAARLGGHVLDGCNDFIASGEEGTAAALTCAACGCHRNFHRREIQITVVCDCSSHPTNNGA 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00879 95 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 27 78 IPR006456 -
Pste5g00879 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 79 - -
Pste5g00879 95 Pfam ZF-HD protein dimerisation region 26 78 IPR006456 -
Pste5g00879 95 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 28 77 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00879 Pste-Chr5 5669958 5670245 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00879 23 92 Zinc finger-homeobox gene family AT3G28917 69.014 2.30e-31 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste5g00879 ZF-HD_dimer 5.8e-29 No_clan