Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00877 ATGACAAAAACCTTGTCTTTCTCCAACGGTGTCCTCAAGCGCCACCCTCATCACCACCATCCTCCCATCTCCACCGCCATCACCTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTGGGGGGCCATGCTCTAGACGGCTGCGGCGAGTTCATGCCCTCGCCCACCGCCACCGTCGCCGACCCCAGCTCCATAAAATGCGCCGCATGCGGATGCCACCGCAACTTCCACCGCCGTGAGCCCGAGGAACCCCCCATCGCCTCCACCACGCACGTCATCGAGTACCAGCCCCACCACCGCCACCACCCTCCGCCGCCGTTCCCTACGGCCGTGGCTTCCACTCGCAGCCCCAATTCTGCGTCCCCGCCGCCGATCTCCTCGTCGTACTACCCTTCCGCCCCGCACATGCTCCTCGCCCTCTCCGCCGGGCTCGCCGCTCCGCCGGAGAGCACCGCAGCACCCTCCGCCACCCTTACCAGAAAGCGCTTTAGAACTAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCACAAGTTCGCTGAGAAAGTGGGGTGGAAGATGCAAAAACGAGACGACGATTTGATTCATGACTTCTGCAACGAGGTTGGCGTGGATAGAAGTGTTCTCAAGGGTTTTGAAGACCCTAACACCAAGGATGGTGGTGAAGATCGCGGTGAGGATCTCAGTCGTAATCACTTTGGTGGGCCCAACGTTGGTGCTAACGGGTCTTCTTCTACCTCTTGA 741 0.5978 MTKTLSFSNGVLKRHPHHHHPPISTAITYKECLKNHAANLGGHALDGCGEFMPSPTATVADPSSIKCAACGCHRNFHRREPEEPPIASTTHVIEYQPHHRHHPPPPFPTAVASTRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSATLTRKRFRTKFSQEQKEKMHKFAEKVGWKMQKRDDDLIHDFCNEVGVDRSVLKGFEDPNTKDGGEDRGEDLSRNHFGGPNVGANGSSSTS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00877 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 209 - -
Pste5g00877 246 NCBIfam homeobox domain, ZF-HD class 160 209 IPR006455 -
Pste5g00877 246 Gene3D - 147 218 - -
Pste5g00877 246 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 28 80 IPR006456 -
Pste5g00877 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 80 IPR006456 -
Pste5g00877 246 SUPERFAMILY Homeodomain-like 153 209 IPR009057 -
Pste5g00877 246 MobiDBLite consensus disorder prediction 1 23 - -
Pste5g00877 246 MobiDBLite consensus disorder prediction 209 246 - -
Pste5g00877 246 MobiDBLite consensus disorder prediction 96 127 - -
Pste5g00877 246 Pfam ZF-HD protein dimerisation region 27 81 IPR006456 -
Pste5g00877 246 MobiDBLite consensus disorder prediction 112 126 - -
Pste5g00877 246 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00877 Pste-Chr5 5630344 5631201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00877 3 219 ZF-HD Transcription Factor Family AT5G15210 53.211 5.93e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste5g00877 ZF-HD_dimer 3.4e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00877 5 5630344 5631201 Pste5g00877 5 5630344 5631201 ECH
Pste9g00665 9 3397130 3399611 Pste5g00877 5 5630344 5631201 PCT