Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00875 ATGACGCCCCTCCGTCATGGGCCAGGCCCAATTCACAAGAAGATAACATTGCCATTGCCATGGGTATCCCTTCCTTTAAATCCATGCTTCATCACCCTCAACCTCAACCTCAACCTCAACCTCAACCTCAACCTCAACCTGACTCTTACTTCAACTTTAACTTCAACCCTGCTAATTCTCTCCCTTTTGTTCCTAACATGGACTCTTTCCCCTCTCTTGACCCCTTCTCACCCTCACTCCCTTTGCTCAACTCCATGCCCTTTGACACACCCTATGACTTGGGCCTTGACACTGGGCTTCAATCCTCATGTCCTTATCCCCCTCTATTTCCCCAGGCCCAGATGCGCTTCGAGCTGTCTCAACTTGGGCAGCTCGAAGTTCTGACATCTGGGCCGGGGACTGCTGCCCCATTCGATAACGGGGCAGCTAAGTCTGCGGTGACTCTTATTGAGTCCCAGCAGCCTACGCTTTACCGGAAGCGAAGAGGGACGGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGTGGGAGGAGGGTGAGGAAGGGAGTAGTGCTGACGTGGATGGGTCCGGGTTGAACTACGAGTCTGATGAATTGAATGAGAATAACAATGGTTTGAAGGGGAGTGAGAATGGTGGAGATCACAAGGGGAAGAGGAAGGGGCTGCCCGCCAAAAATCTCATGGCAGAGCGCCGCCGCCGGAAGAAGCTCAATGATAGGCTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGACAGAGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTCCATAACGAGCTGGAGTCAACTCCACCTGGTTCGTCGCTGCCAGCTTCTACTTCTACAAGCCTTCAGCCTTTAACACCCACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAGCCAATCTGCAAAGGTTGAAGTTAGAGTAAGAGAAGGGAGAGCTGTCAACATTCATATGTTTTGCACCCGCCGGCCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAACGGCTTCGCTTTAGATGTGTTCAAAGCTGAGCAATGCAGAGAAGGCCAGGATGTTCCCCCTGAGCAAATTAAAGCAGTGCTCTTGGATTCAGCGGGCTTCCAT 1235 0.5174 MGIPSFKSMLHHPQPQPQPQPQPQPQPDSYFNFNFNPANSLPFVPNMDSFPSLDPFSPSLPLLNSMPFDTPYDLGLDTGLQSSCPYPPLFPQAQMRFELSQLGQLEVLTSGPGTAAPFDNGAAKSAVTLIESQQPTLYRKRRGTAEIPGLETVRRKWEEGEEGSSADVDGSGLNYESDELNENNNGLKGSENGGDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSSLPASTSTSLQPLTPTLPTLPCRVKEELYPGTLPSPKSQSAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVPPEQIKAVLLDSAGFH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00875 392 CDD ACT_UUR-ACR-like 324 384 - -
Pste5g00875 392 MobiDBLite consensus disorder prediction 260 285 - -
Pste5g00875 392 MobiDBLite consensus disorder prediction 192 207 - -
Pste5g00875 392 MobiDBLite consensus disorder prediction 1 32 - -
Pste5g00875 392 FunFam BHLH transcription factor 198 266 - -
Pste5g00875 392 MobiDBLite consensus disorder prediction 156 207 - -
Pste5g00875 392 CDD bHLH_AtAMS_like 205 276 - -
Pste5g00875 392 MobiDBLite consensus disorder prediction 176 190 - -
Pste5g00875 392 Gene3D - 196 265 IPR036638 GO:0046983
Pste5g00875 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Pste5g00875 392 SMART finulus 208 257 IPR011598 GO:0046983
Pste5g00875 392 Pfam Helix-loop-helix DNA-binding domain 209 251 IPR011598 GO:0046983
Pste5g00875 392 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 81 391 - -
Pste5g00875 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 273 IPR036638 GO:0046983
Pste5g00875 392 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00875 Pste-Chr5 5609039 5612801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00875 134 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 71.074 1.87e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g00875 HLH 1.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00875 5 5609039 5612801 Pste5g00875 5 5609039 5612801 ECH
Pste5g00875 5 5609039 5612801 Pste9g00640 9 3243290 3248982 PCT