Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00872 ATGTTTGATTTGTGTCTCTCCAACTTTGAGATTAATTTTGTTTTTTCTCCTTTTTTCCAAAATTCCATGGAGAACTGTGGCACCGCTGCTAGAAGAAGCTTGAAGCGGAAGCTGGAAGCAGATTTGACACCAGATCAGACATGTACAAAAGCGCGGTGCCTCACTTTTCAACAACTTCATTCAGATATCTCTGCAAAGATTCTCCCACTGGTTTCTCTCCTCAATGCATCCTCTTCCTCCGATTACTCTACCGTTAAGAGCGCTGTCCACGCCCTCTTTCTACTTGCTCAGAACGAGGATCTGGTGGATATGATAGTTAATTGCCGCGTGGTTCCTACTCTGCTGAGACACATTCGATTGCCAGATCAACGGATAGATCACAGTGATGACCCATATGCTGTGGAACATGAATGCTTTACCAAACGATACCCCTTTGAAGTCGTCAAAGAATGTGTCCATGTTCTTGAGCTTATTGCTGTTAGTGAAGAGTATCAGCAACTCATTGTAGATGCTGGAGCCTTGCCTTGTCTTGTAGATTGGTTAAGGATGCAAAACATTAATACTATTTCTCAACCACTTATTGATCTTTTAAGGAGAGTGGCTGATGCAATAACCAGCCTAGCCCATGAAAATACTCGCATTAAGACCCTAGTCAGGATGGAAGGTGGTATACCTCCTCTTGTTGAATTGCTTGAATTAAATGATATAAAGGTGCAGCGAGCAGCTGCACAGGCCTTGCGGACTCTTGCATTTAGAAATGATGGCAATAAAAATCAGATTGTTGAATGCAATGCATTACCCACTCTTGTACTAATGCTACGATCAGAGGATCCTACAATACGTTATGAGTCGGTCGGTGTGATTGGAAATCTGGTTCACTCTTCACCAGATATTAAGAAAGACGTTCTTCTAGCTGGCGCTTTACAACCTGTCATTTGTTCACTTAGTTCCTGCTGTTCGGAGACCCAAAGAGAAGCAGCCCTTTTAATTGGTCAATTTGCCACAACAGATTCAGATTGCAAGGTTCATATTGCCCAAAGAGGGGCTATTCCACCACTAGTTGGCATGCTTAAGTCTCCAGATGCTGAGCTTCAGGAAATGTCAGCTTTTGCACTAGGGAGGTTGGCACAGGACTCACATAATCAAACTGGTATTGCTCAAAGCGGAGGTATAGAGCCTCTGATCAAACTTCTTAACTCAAAGAAGGCTCCCGTCCAACAAAATGCTGCTTTTGCTCTCTATTGTCTTGCTGATAATGAGGACAATGTTGCAGACATTATTAAGGCTGATGGTTTTAAAAAATTGAAGACTGGAAATTTCAGAAATCAACAAACAGGAGAGTGTGTAGCAAAAGCATTAAAAAGATTAGAGGAAAAGACTCAAGGGCGAGTGTTGAAACACCTAATATATCTTATGCGCTTTGGGGAAGAAGTGATTCAAAGACGTATAGCTATTGCTCTTGCTTATTTATGTTCTCCTCAAGATCGAAAAACTATATTCATTGATAATAATGGATTAAAATTGTTGCTGGATATTCTTAAATCTCCAAACATAAAGAAGGGTGATGCTTCAGCAGCTCTTCACAAATTGGCGACCAAAACGAGTTCTTTCTCTCTTTTTGACGTTGCTCCTCCGTCACCAACACCCCAGATGTACCTGGGCGAGGAATATGTAAACAATCCTAAACTCTCTGACGTCACATTCGTGGTTGAAGGTAGACGTTTTTATGCTCATAGAGATTGTTTACTTTCTTCAGATATATTTCGCGCAATGTTTGATGGTAGTTATAGGGAAAGAGAAGCCACAAGTATAGTAATTCCAAATATTAAATGGAATGTCTTTGAATTGATGATGAGGTTTATATACACTGGAACGGTAGATATCAACGTGGATATTGCTCACGACCTGCTCAAAGCAGCCGATCAGTATCTTCTGGATGGCCTCAAGCGTATTTGTGAATATGCTATTGCTCAGGAAATTTCTGAGGAAAATGTTTTATTGCTGTACAAGATGTCAGAGGATTTCAATGCTACTACATTAAAGCATTCCTGCATACTGTTAATGCTGGATAAATTTAATGAACTGAACTCTGAACCATGGTACTATCCCCTGATGCATCGCATTTTACCAGACATAACCTTGTTCTTCTCAACTTTACTTGTCAAGTCTCATCAAGCTGACTCGTGAGGATCCCTAGCTTTTAGCCATGGCAGCAGGAAAGGTGAAAATGTACAAAAGCTGTAGGATATGTTATAGTTAGATATGGAAACCACAGATTTCTTTTTTAGTCTAGGTAGTGAGGGAATAGTCATTTCGTTTGAATAACGGTCCGTACATATTTTTTTCTCTATGAATTACTTGATTAACTTATCATTTTTACAGTAAATGGCTCCTTCACCTCAATGGAGC 2409 0.4039 MFDLCLSNFEINFVFSPFFQNSMENCGTAARRSLKRKLEADLTPDQTCTKARCLTFQQLHSDISAKILPLVSLLNASSSSDYSTVKSAVHALFLLAQNEDLVDMIVNCRVVPTLLRHIRLPDQRIDHSDDPYAVEHECFTKRYPFEVVKECVHVLELIAVSEEYQQLIVDAGALPCLVDWLRMQNINTISQPLIDLLRRVADAITSLAHENTRIKTLVRMEGGIPPLVELLELNDIKVQRAAAQALRTLAFRNDGNKNQIVECNALPTLVLMLRSEDPTIRYESVGVIGNLVHSSPDIKKDVLLAGALQPVICSLSSCCSETQREAALLIGQFATTDSDCKVHIAQRGAIPPLVGMLKSPDAELQEMSAFALGRLAQDSHNQTGIAQSGGIEPLIKLLNSKKAPVQQNAAFALYCLADNEDNVADIIKADGFKKLKTGNFRNQQTGECVAKALKRLEEKTQGRVLKHLIYLMRFGEEVIQRRIAIALAYLCSPQDRKTIFIDNNGLKLLLDILKSPNIKKGDASAALHKLATKTSSFSLFDVAPPSPTPQMYLGEEYVNNPKLSDVTFVVEGRRFYAHRDCLLSSDIFRAMFDGSYREREATSIVIPNIKWNVFELMMRFIYTGTVDINVDIAHDLLKAADQYLLDGLKRICEYAIAQEISEENVLLLYKMSEDFNATTLKHSCILLMLDKFNELNSEPWYYPLMHRILPDITLFFSTLLVKSHQADS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00872 728 Gene3D - 191 317 IPR011989 -
Pste5g00872 728 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 264 306 IPR000225 GO:0005515
Pste5g00872 728 ProSiteProfiles BTB domain profile. 564 630 IPR000210 GO:0005515
Pste5g00872 728 Pfam BTB/POZ domain 556 658 IPR000210 GO:0005515
Pste5g00872 728 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 27 724 IPR044282 -
Pste5g00872 728 Gene3D - 318 537 IPR011989 -
Pste5g00872 728 Gene3D - 52 190 IPR011989 -
Pste5g00872 728 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 389 431 IPR000225 GO:0005515
Pste5g00872 728 Gene3D Potassium Channel Kv1.1; Chain A 543 688 IPR011333 -
Pste5g00872 728 SMART arm_5 253 293 IPR000225 GO:0005515
Pste5g00872 728 SMART arm_5 98 160 IPR000225 GO:0005515
Pste5g00872 728 SMART arm_5 378 418 IPR000225 GO:0005515
Pste5g00872 728 SMART arm_5 337 377 IPR000225 GO:0005515
Pste5g00872 728 SMART arm_5 55 97 IPR000225 GO:0005515
Pste5g00872 728 SMART arm_5 295 335 IPR000225 GO:0005515
Pste5g00872 728 SMART arm_5 451 492 IPR000225 GO:0005515
Pste5g00872 728 SMART arm_5 211 251 IPR000225 GO:0005515
Pste5g00872 728 SMART arm_5 161 202 IPR000225 GO:0005515
Pste5g00872 728 SMART arm_5 493 532 IPR000225 GO:0005515
Pste5g00872 728 SMART BTB_4 564 660 IPR000210 GO:0005515
Pste5g00872 728 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 348 390 IPR000225 GO:0005515
Pste5g00872 728 SUPERFAMILY ARM repeat 69 187 IPR016024 -
Pste5g00872 728 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 222 257 IPR000225 GO:0005515
Pste5g00872 728 Pfam Armadillo/beta-catenin-like repeat 215 250 IPR000225 GO:0005515
Pste5g00872 728 Pfam Armadillo/beta-catenin-like repeat 337 376 IPR000225 GO:0005515
Pste5g00872 728 Pfam Armadillo/beta-catenin-like repeat 385 410 IPR000225 GO:0005515
Pste5g00872 728 Pfam Armadillo/beta-catenin-like repeat 253 292 IPR000225 GO:0005515
Pste5g00872 728 SUPERFAMILY POZ domain 555 657 IPR011333 -
Pste5g00872 728 SUPERFAMILY ARM repeat 195 528 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00872 Pste-Chr5 5574828 5580750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00872 308 527 U-box Gene Family AT1G23030 25.322 5.81e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pste5g00872 BTB 1.7e-22 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00872 5 5574828 5580750 Pste5g00872 5 5574828 5580750 ECH