Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00852 GGAAAGATGAAAGATGAGATGAAACGGTAGTAGACTAGTAGCGAGACCAGGTGAGGACGCGCGAGGTGGAGCATTCATTGATTTTGGCGTGTGAAGTGTGATTGTGATCCCATAACAGAAGCAATGGCCACCAGGTACTGGGCTGTGTCTCTTCCCGTTCACAACTCCGCTTCTCACCTTTGGAACCAATTGCAGGAACGAATCTCCAAACATTCCTTCGATACTCCTCTTTACAGATTCAACGTCCCTAACCTCCGCGTCGGAACCCTAGACTCGCTCCTCTCGCTCAGCGATGATCTCGCAAAGTCCAACAATTTCGTCGAGGGAGTCACGCACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCGTAGACACCGGCGGCCTCACCGTCGATGGCGTTCCCGTTGATTCCTACTTGACCAGGTTTGCTTGGGATGAGGCTAAGTACCCGACCGTGTCGCCTTTGAAGGAGATCGACATTATAACCTCAGAACATTTAACTACCCTCCTTGCTGTTGTTTCCAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTGACAAATTATGTGGTCCCCAGGTCTTCTAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTTTTCAATCGTGTTGCGGATAATTTTAGAACTAGTGCACGGGAAAAAGGATTCCAAATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAGTTGGATACATTGATACAGGATCAGGAAAGATTGAGGTCTTCTCTGTTGCAATGGTGCTATACCAGTTACGGAGAGGTTTTCAGTTCCTGGATGCACTTCTCTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGCCTGCCACCATCTTTCTTGGCATGTGTTTTAGCACCTTCTGTAAAATCTGAGAAGAAAGTACGTTCTATCCTTGAAGGTGCATACTGGAAGACTGAGGATGACGGTGCCGGGATGGCTGGCCTAGCAGGTGATGCTGATGCCCACCCCTATGTTTCTTTCACTATCAATCTTGCTTGAGTGCTCTCAGAAACCGCCTGAATGTTGAGGGCTCCTTTTGGACAGCAATAATGCCGATGCAAACAGGATTTGAAGACAGTGTACATTATGATCATATTTCATTCTTTATTATTTATCTATATAATTGAAGCAATCAATGTTTCAAAAGGGTCTAATGAATCTTAAGAAGTAGCATCTTGTGCCTGGATTGATCATTAGCAACTTGTATTGTTTAGTGTAAGTTTTCTTGTTTGAGATTATGTGAACTTGGAGAGGTGACACTATTTGCCCACCCCTTTTGATAATATGCAGCCATTCAGAGTGTAATAATAAACTGTAATGCGTACGCAATAAGGTTGTTTATTGTTGTACTTCTCAAGAATTTTTCCTATTTAAAGATATTGTACTTCGAATCTATTTAGTTATATTATTGGAATAATAAAACTGACACTTTTTTAGGGATATTTTATG 1524 0.4291 MATRYWAVSLPVHNSASHLWNQLQERISKHSFDTPLYRFNVPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELERVSGVDTGGLTVDGVPVDSYLTRFAWDEAKYPTVSPLKEIDIITSEHLTTLLAVVSKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEYSPETHENRKQELDTLIQDQERLRSSLLQWCYTSYGEVFSSWMHFSAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILEGAYWKTEDDGAGMAGLAGDADAHPYVSFTINLA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00852 316 FunFam V-type proton ATPase subunit C 115 199 - -
Pste5g00852 316 CDD V-ATPase_C 5 313 IPR004907 GO:0033180|GO:0046961|GO:1902600
Pste5g00852 316 Pfam V-ATPase subunit C 5 121 IPR004907 GO:0033180|GO:0046961|GO:1902600
Pste5g00852 316 Pfam V-ATPase subunit C 120 291 IPR004907 GO:0033180|GO:0046961|GO:1902600
Pste5g00852 316 Gene3D - 123 199 - -
Pste5g00852 316 Gene3D - 41 121 - -
Pste5g00852 316 Gene3D - 200 260 - -
Pste5g00852 316 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 123 315 IPR004907 GO:0033180|GO:0046961|GO:1902600
Pste5g00852 316 Gene3D Vacuolar atp synthase subunit c; domain 1 261 286 - -
Pste5g00852 316 Gene3D Vacuolar atp synthase subunit c; domain 1 8 40 - -
Pste5g00852 316 SUPERFAMILY Vacuolar ATP synthase subunit C 1 315 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00852 Pste-Chr5 5406510 5412647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00852 1 316 Primary Pumps ATPases(2) AT1G12840 68.000 0.0 519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00852 5 5406510 5412647 Pste5g00852 5 5406510 5412647 ECH