Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00842 ATGGGTGCAGCAGGGGGAAATAAGAGGCTTCAAAGCATGTTGAGGGCAGCAGTGCAATCGGTTCAGTGGACTTACAGCCTCTTCTGGCAAATTTGTCCACAAGAAGGGATTCTGAGGTGGGGTGATGGATACTACAACGGAGCAATAAAGACAAGGAAGACAGTTGAAGCAATGGAGGTAAGCACCGAGGAAGCGTCGCTGCAAAGAAGTGACCAACTTAGAGAGTTATACCAATCTTTGTCTGCTGCCCCAACTACTCCAAGACGACCATGTGCTGCTTTGTCGCCTGAGGATCTAACCGAGTCTGAATGGTTCTATTTGTTGTGTGTTTCATTCTCCTTTCATCCTGCTGTTGGGTTGCCGGGAACGGCATATGCAAGGGGGCAACATATATGGCTCAGTGATGCAAACCAAGCAGACAGCAAAACATTTTCAAGAGCTATTCTTGCCAAGACAGTGGTGTGCATTCCTGTGTTGGAGGGGGTGGTTGAGTTGGGCACAACAGATAAGATGGAAGAAGACCATAACTTCATCCAACACATAAAGAGTTTCTTCATAGAGCAGCAGCAGCAGCAGCAGCAGCCTCCTCCGTCAAAGCCTGCATTATCACAACACTCCACCTCCAATCCCACACCTTCATACCCTCTTGTCAATGTGGTGCTGAATGTTGATAAAGGACAAGATATATTATTGAATTCGGAAGCTGCGAATGCAGAAGCAGTTGGTAACAGCTTCATACAAAGCGAGTTAATGGAGCTTGATGCGTTGGAGTTGGAGGACTTAAGGGTTGGAATACGATCTGCAGGATTGGATAATTCCTTCCCCACACAGGTCTGTTCACCGTCCTTGGACCTCCTTCAACTTCATGTCCCACCTCCTCCGGAACATCCTCCCTCAGGAAACTTGGCACAAGGCAACACAGACACTCACTATTCTCAAACAGTGTCCAGCATCCTTCAAAACAACTCTGGGTGGTGGCCGGACTCACCCTCAGTCACCCACCTCAATGATTCCTTCCAATCAGCTTTCAACAAATGGAGCTCCGGCGCCGACAACCGCCATGTGTCGGTGGCCAACGTCACCTCCCAGTGCTTCCTCAAGTACATTCTATTCACTGTCCCTTACTTGCACGCCAACAGACTCAAGGCCAAAGGCGCTCTGCCATACGAGACCAGCCAAGTGATGGCGGAGCGCCGCCGCAGGGAGAAGCTTAATGAGAGGTTTCTCATTTTGCGTTCGATGGTGCCTTTTGTTACCAGAATGGACAAGGTGTCCATTCTGGAAGACACCATCGAGTACATAAAACAATTGAGAGAGAAGATTAAGAGTGTGGAGGCGCGTGAGTGTCTTGTGGGAAAGAGGAGGGGGAGGGAGGTGGAGGTTTCGATCATAGAGAGTGATGCTCTGGTGGAGGTGGAGTGTGTTCATAGGGAAGGGTTGTTGCTTGATGTGTTGACAATGCTGAGAGAGTTAGGTGTGGAAGTGATGATGGTGCAATCGTGGGTTAAGGATGATGGAGTGTTTGTGGCCGAGATTAGAGCAAAGGTTAAGGAAAATGGTAATGGGAAAAAGGCTAGCATTGTGGACTTGACAAAGGCACTTAACCAGATTATACCTCATCATCATCGCCCATACACACTTGCTTCCAATCATCATTTTTAA 1662 0.4844 MGAAGGNKRLQSMLRAAVQSVQWTYSLFWQICPQEGILRWGDGYYNGAIKTRKTVEAMEVSTEEASLQRSDQLRELYQSLSAAPTTPRRPCAALSPEDLTESEWFYLLCVSFSFHPAVGLPGTAYARGQHIWLSDANQADSKTFSRAILAKTVVCIPVLEGVVELGTTDKMEEDHNFIQHIKSFFIEQQQQQQQPPPSKPALSQHSTSNPTPSYPLVNVVLNVDKGQDILLNSEAANAEAVGNSFIQSELMELDALELEDLRVGIRSAGLDNSFPTQVCSPSLDLLQLHVPPPPEHPPSGNLAQGNTDTHYSQTVSSILQNNSGWWPDSPSVTHLNDSFQSAFNKWSSGADNRHVSVANVTSQCFLKYILFTVPYLHANRLKAKGALPYETSQVMAERRRREKLNERFLILRSMVPFVTRMDKVSILEDTIEYIKQLREKIKSVEARECLVGKRRGREVEVSIIESDALVEVECVHREGLLLDVLTMLRELGVEVMMVQSWVKDDGVFVAEIRAKVKENGNGKKASIVDLTKALNQIIPHHHRPYTLASNHHF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00842 553 PANTHER TRANSCRIPTION FACTOR TT8 7 540 - -
Pste5g00842 553 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 388 437 IPR011598 GO:0046983
Pste5g00842 553 SMART finulus 394 443 IPR011598 GO:0046983
Pste5g00842 553 Coils Coil 427 447 - -
Pste5g00842 553 Pfam Helix-loop-helix DNA-binding domain 393 438 IPR011598 GO:0046983
Pste5g00842 553 Gene3D - 390 448 IPR036638 GO:0046983
Pste5g00842 553 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 185 IPR025610 -
Pste5g00842 553 MobiDBLite consensus disorder prediction 188 215 - -
Pste5g00842 553 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 392 446 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00842 Pste-Chr5 5321608 5331027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00842 3 540 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 45.699 1.06e-142 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g00842 bHLH-MYC_N 3.7e-47 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00842 5 5321608 5331027 Pste4g02224 4 16102690 16117140 PCT