Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00810 ATGGATAACGTTTCCAAACCAAGAAAGAAAAATCAGCAGTTTGAATTGCCAACTGGTTTTACATTTCATCCAACGGATGAAGAACTGATAAATCACTACCTCACAAAGAAGGTTGTTGACAACTGTTTCTGTGCTATGGCCATTGGTGAGGTTGATTTGAACAAGTGTGAGCCATGGGATTTGCCAGGGTTGGCTAAAATGGGTGAAACTGAATGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCTAAGGACTAATAGGGCCACTGACGCTGGTTATTGGAAGGCCACTGGCAAAGACAAGGAGATAAAAATGGAAAATGCACTCATTGGGATGAAGAAAACTTTGGTTTTCTACAGGGGAAGAGCTCCTAAAGGTGAAAAGACAAACTGGGTTATGCATGAATATAGGTTGGAAGGGAAACATAATCAACCCAAACCAGGAAAGAGTGAGTGGGTTATATGTAGAGTCTTTGAGAAGAGTTCTTGTGGAAAGAAAATGCATGTTCCAAACTATGGGAGGTTGAATTCCTTTGGAGAAGAGCCATCATCACTTGCTTCTCTATTGCCTCCTCTGATAGATTCTTCTCCATACAATAGTGAAACAAGAACCACAGCTGGTGAGTTGTCTCAGGTGACTTCCTTCTCTGATCCAAATCAAACTGAGGATCAGAACACACATGATGACATTGTTGATAGCATGGAAACACCTATTTTAAACTTTTCAATCTGTTCAAGACCAAACGATGCTTCCAATTTGGCTAAAGCAACTCTTTTAGTTTCAAAACAGTCAACACAGATTGCACACCAAATTGGGAACTCACAGTACCCAGATTATTGTTATGTGCCTCAAGAACAGTCCATGTTGAGGATGCTGATGGAAAACCATGGACCAAGTGCAAAGCAAGTTCAGAAAGCAGAGTTTTCTGAGGGAAGAGACATTGATGCTGATATCTCATCTGTGATATACAACAGAGACATGATACACAAAAGGTTTGGGAATCAAGAACATGCATCAGCTTCTGCAGGGCCAGTGGACACCGATTGCCTTTGGAATTACTAAAGAAGGTTAAG 1082 0.4094 MDNVSKPRKKNQQFELPTGFTFHPTDEELINHYLTKKVVDNCFCAMAIGEVDLNKCEPWDLPGLAKMGETEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIKMENALIGMKKTLVFYRGRAPKGEKTNWVMHEYRLEGKHNQPKPGKSEWVICRVFEKSSCGKKMHVPNYGRLNSFGEEPSSLASLLPPLIDSSPYNSETRTTAGELSQVTSFSDPNQTEDQNTHDDIVDSMETPILNFSICSRPNDASNLAKATLLVSKQSTQIAHQIGNSQYPDYCYVPQEQSMLRMLMENHGPSAKQVQKAEFSEGRDIDADISSVIYNRDMIHKRFGNQEHASASAGPVDTDCLWNY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00810 356 SUPERFAMILY NAC domain 13 163 IPR036093 GO:0003677|GO:0006355
Pste5g00810 356 FunFam NAC domain-containing protein 100-like 25 167 - -
Pste5g00810 356 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Pste5g00810 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 254 - -
Pste5g00810 356 MobiDBLite consensus disorder prediction 199 224 - -
Pste5g00810 356 MobiDBLite consensus disorder prediction 199 229 - -
Pste5g00810 356 ProSiteProfiles NAC domain profile. 16 163 IPR003441 GO:0003677|GO:0006355
Pste5g00810 356 Gene3D NAC domain 25 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00810 Pste-Chr5 5175305 5176736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00810 15 356 NAC Transcription Factor Family AT5G07680 53.314 1.41e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste5g00810 NAM 2.3e-39 No_clan