Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00806 GCATTATCGTCCATCAAAATCATGATCCACATACATTATCTCATATTTATTCCGCTGACCTTTCTTCGTTGCTCATTATCTCTCCTTTTACAAGTCCAACTCACTATCTTTCTCTTTTCAAGTGCTACTTTCAGACTCCTCGATCTTGTGCTATATAAAGTCACCACAGTCTCTAACACTGTTCCCCCACTTTCTCCAAAAATGGGAAGATCACCATGCTGTGACAAGGTGGGTTTAAAGAAAGGACCATGGACGCCAGAGGAAGATCAGAAGCTCTTGGCTTATATTGAAGAACATGGCCTTGGAAGCTGGCGTGCTTTGCCACCAAAAGCTGGACTTCAGAGGTGCGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAAGAAGAACAAACCATCATTCAACTCCATGCACTCTTAGGAAACAGGTGGTCGGCAATAGCCACACATTTGGCAAAGAGAACAGATAACGAGATAAAGAACTATTGGAACACACATCTTAAGAAAAGGTTAGACAAAATGGGCATTGACCCGGTGACCCACAAGCCGAAGAACGATACCCTTCTCACAGAGGGCCATTCAAAGAGTGGTGCGAACCTCACCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCCGAAGCAAGATTGGCGAGACAATCAAAGCTACGTACTTCACACTTGAACCAATCCCTAATTCCCACTTTTGCAACCTCATCTTCAGCTCCAAGTCCAACCATACCCTCCTCATCACGTTCTCATGATCAAGCTTGCAAAAATACCAGGGTGAGTGACCTTGAATCCCCCACCTCTACCTTATCTGAGAACAATACTAATGTGAAGGAAGAAGGAGAGGATAATGACTGCAAGTGGAACAAAGGTTACACCCCATTCGGAGAATACAGAAACAGCATCGTCACAATCACCATGCCAACCACTTGGGGATCTAGTGCTACTAGTGCACATGCACATGCTTCTCCAGAGGGATTTACCAACCTTCTCAATACTAACTCCAGTCACCGGCTTTTGTCGCCGGAGGAAGGTGGAGAGTCTCATAACTGTCATGCCAATCGTGACAGTGACTTGTATGGAGATAACAAGATCTATTGGAATAACATTCTTAACTTGATGAATTACACTTCCCCTTCCGATTCTCCCATCTTCTGATTCACTTGCATTCCAATTCCAAGGTAAATCAACCCTTTTAACGTTCAATTTACCAAACATGACATTTTAGTTTTTTTGTACCATCTCTGTTAGATGTCATAAATATGTGGGGCTTGTTTAAAATTTACATAGAGATATAAATACAAACTTGGACGATACTATACGAATGAAGATGCGCACAGGGAGGGTCCATTGTTCTTGTGTTGGAAGTGCTTTGAGTTGCTGAAAATGACCATTGGTTTTCTTCACATGTTGCCATACAAGAACTGATGAGCATGTAGACACGGGAAAATGTTGATTCCCAACAATATGTTTTTTTCAATGCTTTCACATAGAAAACTAAGTGTGTATCGCCTCTTTCCATCAATCAAATGTTAATATTATCAATTTGTTTTGGATTTGACTGGATTTTGCCTTTTGTTTCCTAGTTTATAAGGATATGTTTGTGTAGATTATAATGAATGTGATGATATAGTAGTGATCAGTAAGTTGAAAGACTTTTATTTACTCTCTAGTAACTTTCTTTATTTCAAGTTGTATACCAGAAATATCCAATAATAG 1764 0.4093 MIHIHYLIFIPLTFLRCSLSLLLQVQLTIFLFSSATFRLLDLVLYKVTTVSNTVPPLSPKMGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGLGSWRALPPKAGLQRCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLAKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDTLLTEGHSKSGANLTHMAQWESARLEAEARLARQSKLRTSHLNQSLIPTFATSSSAPSPTIPSSSRSHDQACKNTRVSDLESPTSTLSENNTNVKEEGEDNDCKWNKGYTPFGEYRNSIVTITMPTTWGSSATSAHAHASPEGFTNLLNTNSSHRLLSPEEGGESHNCHANRDSDLYGDNKIYWNNILNLMNYTSPSDSPIF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00806 393 MobiDBLite consensus disorder prediction 241 291 - -
Pste5g00806 393 FunFam MYB transcription factor 128 189 - -
Pste5g00806 393 SMART sant 73 123 IPR001005 -
Pste5g00806 393 SMART sant 126 174 IPR001005 -
Pste5g00806 393 CDD SANT 76 121 IPR001005 -
Pste5g00806 393 FunFam Transcription factor RAX3 67 127 - -
Pste5g00806 393 Pfam Myb-like DNA-binding domain 127 172 IPR001005 -
Pste5g00806 393 Pfam Myb-like DNA-binding domain 74 121 IPR001005 -
Pste5g00806 393 MobiDBLite consensus disorder prediction 322 362 - -
Pste5g00806 393 Gene3D - 128 192 - -
Pste5g00806 393 MobiDBLite consensus disorder prediction 322 349 - -
Pste5g00806 393 ProSiteProfiles Myb-like domain profile. 69 121 IPR001005 -
Pste5g00806 393 SUPERFAMILY Homeodomain-like 71 168 IPR009057 -
Pste5g00806 393 MobiDBLite consensus disorder prediction 241 283 - -
Pste5g00806 393 Gene3D - 71 127 - -
Pste5g00806 393 ProSiteProfiles Myb-like domain profile. 122 172 IPR001005 -
Pste5g00806 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 176 IPR017930 -
Pste5g00806 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 61 289 - -
Pste5g00806 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 121 IPR017930 -
Pste5g00806 393 CDD SANT 129 172 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00806 Pste-Chr5 5145918 5149162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00806 61 390 MYB Transcription Factor Family AT3G01140 56.977 8.75e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g00806 Myb_DNA-binding 4.2e-15 CL0123