Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00794 AGCAAATCTCATATGGAAAGATCATCTATATCAAGTGTGAGGAAAGGTGCATGGAGTAAATTAGAAGATAATCTTCTCAAAGCTTCTGTACAACTTTATGGGGAGGGAAAATGGCACCTTATTCCTCAAAGAGCAGGGTTGAACAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTATCTAAAGCCAAATATCAAACGGGGAGATTTTAGTGAAGATGAAATTGATTTGATGATCAGAATGCATAAACTTTTGGGAAACAGATGGTCCCTGATTGCAGGAAGACTTCCGGGAAGAACATCAAACGATGTGAAAAATTACTGGAACACCTACGCACGCCGTAAATTACTGTCTCACAAGAAAGACAACATCGTAAAGAAGCATGATGCCGAATCAACAGAGAAACCCCACCAAGTGATAAAGCCTGTTCCTCGAACTTTGTCAACATCCCCATGCTTGCATCGGAATGTGGTTAACTGTTCCAAAGTAGGTATTAGTGAACAAGGTGCAACTTCATCATTAGTGTGCGGGAATTGGTGGAACACTTTGTTACATGATAAGGAAAATAATGATAGCACTTGCGTCTTTGGTAAGGGAGATGGAGTGCTTGATCTTTCGGGTGAAGACCTTACTTCATTTTCTTGTGACTTTTTTAATGAAGATGAAATTTGGACTGATGTTTTTCTTAATCTGGGAAATTAA 705 0.3943 SKSHMERSSISSVRKGAWSKLEDNLLKASVQLYGEGKWHLIPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEIDLMIRMHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYARRKLLSHKKDNIVKKHDAESTEKPHQVIKPVPRTLSTSPCLHRNVVNCSKVGISEQGATSSLVCGNWWNTLLHDKENNDSTCVFGKGDGVLDLSGEDLTSFSCDFFNEDEIWTDVFLNLGN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00794 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pste5g00794 234 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pste5g00794 234 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pste5g00794 234 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 137 - -
Pste5g00794 234 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pste5g00794 234 SMART sant 14 64 IPR001005 -
Pste5g00794 234 SMART sant 67 115 IPR001005 -
Pste5g00794 234 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pste5g00794 234 CDD SANT 71 112 IPR001005 -
Pste5g00794 234 Gene3D - 7 68 - -
Pste5g00794 234 FunFam Transcription factor MYB113 70 140 - -
Pste5g00794 234 FunFam Myb transcription factor 15 67 - -
Pste5g00794 234 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Pste5g00794 234 Gene3D - 70 143 - -
Pste5g00794 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pste5g00794 234 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00794 Pste-Chr5 5080835 5082099 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00794 9 177 MYB Transcription Factor Family AT1G66370 51.429 2.00e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g00794 Myb_DNA-binding 1.6e-14 CL0123