Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00793 ATGTTCATACCCTGCGATTACTGCGACTCCAAACCCGCGTTACTCTTCTGCCGAGCCGACTCGGCCAAACTCTGTCTCCCCTGCGACCACCACGTCCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACACGTGCAAGAGCGACACCGCCGCTGTCCGCTGCCCCACCCACAACCTCGTACTCTGCCACACCTGCGACCTCGACGCCCACGCCCACTCCCACGCCGCCCCGCACCACCGCCACCGCCTCCACGGCCTCTCCGGCTCCCCCTCCGTCCCCGAGATTGCCTCCGCTCTGGGCCTCGATTTCCGGCCCAACGCCTCCTCCCCGGCCCAGCTCGTCCCCTCCGCCACCCGCGATGAGGCCCACCACCAGCTCCTCGAAATCGCGCGCAAGAGAAACCACCAAAACGACTTCGTTCCCGCCGAAGACACCCTTCACCTTCACCACCTCAAATTCGATTCCCAAAACGACGTCGTTGACGAGATGCTGCTCCAGCAAACTCCCTTCACGTCTTTGCTCATGTTGCCAAATTCCGAATCTGAATTCGACGCCGCCAACAGTAACGATAACAACAACAACAACAACAACGCTTACGGAACCGAAACAGGGGAACTTGTCTGGAATTATAATTCCCCCTATCAGGCTCCTCAGGTGTGGGATTTTCAATTACAGAAATCAAGAGATTGCAGTGAACCGAGGGTGGTGACATTTGATGGTCTAGAAGTTCCAAAATCGTTTCAGGATTTGCATAATATGAATTACTCGGCAATTGGTGATGATATTCTATCAAGAAATAACCAATCGGATCAGTCATCATCAAGTCATGCAAAGAAGAAAGAAGAGAGCAACAAGAAAGCTAGATGTGGGTTATCATCAGAGTCCAAATTGTTTGAATCCATACCATACAGTGCCACCAACAATGTCGTAGTCATGGAGCATCTCGTGGGTGGGAATGAAAGTGTTAGCACCTTAAAAGCCAGGGTTAGCTTGGAAGCGTTAGCTAAGAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAAAAAACCCGAAGGTACGATAAGCACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACTAGAAAGAGGGTGAGAGGGAGATTTGTTAAGGCAAGTGATGTTCAAGCATGATGAGTTCCTTTTCAGAAATCTCATCCGAGTTCAATGCTCTTGTGTGTATACATAAAGTTGTTACACTATCAGAGAGATATGGATATATTTTAGTTTTCATGAACTCCCCGGGCATTGATTCGTTGATTGATTTGAATCTTTTTTGGTAGATGATTTATTTGAATTTTTATTTGTTCCATTACATATGACATAACATAAGAGGGTGAGCTTGTCACATATGACATAACATGAGAGGATGATATATATATATATAAAGCGACACACCGACATTAAATTGCTG 1456 0.4863 MFIPCDYCDSKPALLFCRADSAKLCLPCDHHVHAANALSLKHVRFQICDTCKSDTAAVRCPTHNLVLCHTCDLDAHAHSHAAPHHRHRLHGLSGSPSVPEIASALGLDFRPNASSPAQLVPSATRDEAHHQLLEIARKRNHQNDFVPAEDTLHLHHLKFDSQNDVVDEMLLQQTPFTSLLMLPNSESEFDAANSNDNNNNNNNAYGTETGELVWNYNSPYQAPQVWDFQLQKSRDCSEPRVVTFDGLEVPKSFQDLHNMNYSAIGDDILSRNNQSDQSSSSHAKKKEESNKKARCGLSSESKLFESIPYSATNNVVVMEHLVGGNESVSTLKARVSLEALAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00793 391 ProSiteProfiles CCT domain profile. 344 386 IPR010402 GO:0005515
Pste5g00793 391 MobiDBLite consensus disorder prediction 280 295 - -
Pste5g00793 391 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 387 - -
Pste5g00793 391 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pste5g00793 391 Pfam CCT motif 344 386 IPR010402 GO:0005515
Pste5g00793 391 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Pste5g00793 391 MobiDBLite consensus disorder prediction 269 295 - -
Pste5g00793 391 CDD Bbox1_BBX-like 4 47 - -
Pste5g00793 391 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00793 Pste-Chr5 5066920 5070497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00793 3 388 C2C2-CO-like Transcription Factor Family AT2G33500 35.661 6.47e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste5g00793 CCT 8.9e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00793 5 5066920 5070497 Pste5g00793 5 5066920 5070497 ECH