Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00778 AAAGCCTTTATCTGTCATTTCGTTTCTCAATCGCTCCCTTCTCTCTCCGAATCGAAACCCTAGAAATTCATCATCTTCCAGAATCTGACAGGTTTTGTTAACCGAACCTAAATTCTCTCATCAAACCCTCACTTATCCAAATCGGATACTCCGCATCGATCTCAATTTCCCCAATTCCGTCGCCCGCGTTTCTCACTGCCGAATTCAATTGGCGGATTCCGATACGGTGGCAAACGCATGGGTAAGATTCTCCGAGAAACCGCTAAGCCATCGGCGAATTCTTCATCGGCGTATCCCACATCGGCTCCCGCAACCACGTCTTCGACGTCGGTGACGGAGACGGTGAGGGGTTCGCACCAGTTCAAGATCACGGGGTACTCCCTCTCGAAGGGGATCGGGATTGGGAAGTACATGGCCTCCGACGTGTTTTCCGTTGGAGGGTACGATTGGGCTATTTATTTTTATCCTGACGGGAAGAGCGTCGAGGACAATGCCACCTACGTCTCCCTCTTCATCGCGTTGGCCAGTGAAGGCACCGATGTTAGAGCTCTTTTCGAACTCACTCTTTTGGATCAGAGTGGCAAAGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACCCTCGAGAGTGGACCTTACACCTTAAAATACCGCGGTAGTATGTGGAGTCTTTTTGTGTATTTAATGTTTAGAAGGTTTGAGTTGCTCCTCCCACGAATGCTGTGGAAAAGGGGGAAATGGTCATGCGCCATGCCTTTTGATTGGGGTTACAAGCGCTTTTTTAAGAGAACAGCTCTAGAGACATCAGACTACCTTAAAGATGATTGTCTGTCTGTGAATTGTAGTGTTGGTGTTGTGAGGTCACGCACAGAAGGCCCTAAAATCTATACCATAGCAATACCACCTTCTAACATTGGTCAGCAATTTGGGCAACTGCTGGAAACTAGTAAAGGAAGTGATGTAAATTTCGAAGTTAATGGAGATGTTTTCTCCGCCCACAAATTGGTACTGGCCTCTCGTTCACCCGTTTTCAGAGCACAGCTTTTTGGTCCTATGAAAGATCGGAATACCCAGTGTATTAAAGTTGAAGACATGGAGGCTCCTGTTTTCAAGTGGGACTTCATGATTTTGTGCATTTTCTCCTTGGCTTTTCCTTGTTTTGATTTTGTGCATCTTCATCGTAATGCATTGCTTCATTTTATATACTGGGACTCGCTACCAGACCTACAGGAGCTAACTGGGTTAAACTCCAAATGGGCATCAACTTTGATGGCTCAGCATCTTCTAGCTGCAGCTGATAGATATGGCCTAGAGAGGCTTCGGCTGATGTGTGAAGCTAGCCTCTGCGAAGATGTTGCCATTAATACTGTGGCAACAACTCTAGCCTTAGCGGAGCAGCACCATTGTTTCCAGCTGAAAGCTGTCTGCCTCAAGTTTATTGCTACCTCTGAAAATCTTAGAGCTGTGATGCAAACTGATGGGTTTGAGTACTTGAAGGAGAGTTGTCCCTCTGTTCTAACTGAGCTATTGGAGTACGTGGCCAGATTTACTGAGCATTCAGACTTCATGAGCAAACATAGGAATGAAACACTCCTTGATGGTAGTGACATAAATGGGAGGCGGGTGAAGCAAAGGCTTTAGTGTGAACACTGAACAGCTTTCTGTACAACCCTCTTCCACTCTCCGTTTTAAAAGATAGCGAGAGCATAGTTAGAGGGAGAATATATATAATCTTTTATAGGATCAGGCAATTTTTAATTTTCTTAGCTTATTCATGTGTAAGAGAGATGTAAATGTAATTTGTGTTGTTGCCGTTGCCGTTCTGTTTGAAGTAGGTTTCTGTAATATCTTCGGTATTTCTTTACTGGAAAACGTGTCTTGAAAGTGTTGTTGATCACTACTACTCGGGTTGTTTCTGTATGTTTTTTTACTTTTGATATTATTATGTATGTTTATTCAATATAGTACCGTAAGTGCTGTTTAACATTAGACAGACATCATCTGATTCTATTGTCTCTAACTCTATTTTGTATTAATTATGCCTATTAGATATATAATAATCGTT 2065 0.4349 MGKILRETAKPSANSSSAYPTSAPATTSSTSVTETVRGSHQFKITGYSLSKGIGIGKYMASDVFSVGGYDWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWSLFVYLMFRRFELLLPRMLWKRGKWSCAMPFDWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSRTEGPKIYTIAIPPSNIGQQFGQLLETSKGSDVNFEVNGDVFSAHKLVLASRSPVFRAQLFGPMKDRNTQCIKVEDMEAPVFKWDFMILCIFSLAFPCFDFVHLHRNALLHFIYWDSLPDLQELTGLNSKWASTLMAQHLLAAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMSKHRNETLLDGSDINGRRVKQRL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00778 467 CDD MATH 38 204 IPR002083 GO:0005515
Pste5g00778 467 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 208 IPR008974 GO:0005515
Pste5g00778 467 CDD BTB_POZ_BPM_plant 226 370 - -
Pste5g00778 467 MobiDBLite consensus disorder prediction 1 32 - -
Pste5g00778 467 Gene3D - 373 450 - -
Pste5g00778 467 SMART BTB_4 240 373 IPR000210 GO:0005515
Pste5g00778 467 ProSiteProfiles BTB domain profile. 240 292 IPR000210 GO:0005515
Pste5g00778 467 Pfam BTB/POZ domain 231 292 IPR000210 GO:0005515
Pste5g00778 467 Gene3D Potassium Channel Kv1.1; Chain A 216 367 IPR011333 -
Pste5g00778 467 ProSiteProfiles MATH/TRAF domain profile. 37 204 IPR002083 GO:0005515
Pste5g00778 467 SUPERFAMILY POZ domain 217 371 IPR011333 -
Pste5g00778 467 MobiDBLite consensus disorder prediction 9 32 - -
Pste5g00778 467 FunFam BTB-POZ and math domain 1 373 450 - -
Pste5g00778 467 SUPERFAMILY TRAF domain-like 34 206 - -
Pste5g00778 467 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 26 431 IPR045005 GO:0016567
Pste5g00778 467 CDD BACK_AtBPM-like 370 433 IPR034090 -
Pste5g00778 467 SMART math_3 42 187 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00778 Pste-Chr5 4967265 4971005 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pste5g00778 BTB 5.5e-11 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00778 5 4967265 4971005 Pste5g00778 5 4967265 4971005 ECH
Pste5g00778 5 4967265 4971005 Pste4g01933 4 14386298 14391137 PCT