Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00768 ATGGCAAGGAAGAGAAAGGTTGGTGAAGCAATTGAAGAAAGGAACCCATGTGATGAATCCATGGTATGGGATGAGATGATGAAGGAAGCTGCTGCACTAGGAAGTGGCAGGAGATTGAGGAAGAAATTTGTTGGGGTAAGACAAAGGCCATCAGGAAGATGGGTAGCTGAGATAAAGGATACCATTCAGAAGATAAGGGTGTGGTTAGGCACTTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCCTTCTTCGCGGTGCCAACACTAGAACAAACTTCTTGCATACTTCTCAATCTTCCTCAACCCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCTTTCAAAGGCTTAAAGCAAGGAATACCACTAACAACCCTTGCTCGCTTTCTTCTTCCTCCTCCTCCACCACTACTCCTTTTATCAACCACCAACAAAAGCAACAACCAGATGCATGTAGAACTGAGTCAACATATTTCTCAATGGACCAGTTTACAGATTTCCTTAATGAACCTGAAGATTACAGCACTAGCAACTATGAATCTACTAATGATAGTGCACAAATCGATTACATTACAAGTAGTCTTGAATCATGTTTGAATGAAAATGATGATTGCAAGGAAAAACAAGTTGAAATGGAATTTGATTTCAGGAATGTGACACAAACATCAAGTGGTGATATTAATTCAGGAGGGAAAAGAGAAGACAGTAAGGAAGGCACTGATTTGAGTATCAAGGATTTTCTATTCCTGGACAATGTTTTTCCATCCAATTACTATTATTCACCATTTGAGGCTGCTGAAGAGATTGAGGAGCAGTTGGAGCCTGAGAACTATGGTGATGAGCCTTCAATGCTGAGAGAAGTGATGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTTTATGCTTTCAATGGAATACCTGAGTGCTTGAAGTTGAAACTTGAATCAGGAAACACAAATGGACGAGAAGTTTCGATTTCTAATCAACTAACCAACCTCAAGATGGCTTGTAGCAAAAACAAAATAGAGGCTAATAAGAATAATGAAGCATACACAGAAGTAATGGATAGGAAAGAGGAAGAAAACCCACAAACATCAACTGGCATGGATTGCCCTTTCCCCTCCTTTTCATCCAATATTGATGATGGAGAGCTGTTACTTTGGAATTCACTTGATCTTCCTACTCTTTGCTTTGTTAACTAG 1224 0.4028 MARKRKVGEAIEERNPCDESMVWDEMMKEAAALGSGRRLRKKFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFLHTSQSSSTPALPSKITNLLFQRLKARNTTNNPCSLSSSSSSTTTPFINHQQKQQPDACRTESTYFSMDQFTDFLNEPEDYSTSNYESTNDSAQIDYITSSLESCLNENDDCKEKQVEMEFDFRNVTQTSSGDINSGGKREDSKEGTDLSIKDFLFLDNVFPSNYYYSPFEAAEEIEEQLEPENYGDEPSMLREVMKRMKYERKFSASLYAFNGIPECLKLKLESGNTNGREVSISNQLTNLKMACSKNKIEANKNNEAYTEVMDRKEEENPQTSTGMDCPFPSFSSNIDDGELLLWNSLDLPTLCFVN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00768 407 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Pste5g00768 407 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Pste5g00768 407 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Pste5g00768 407 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Pste5g00768 407 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Pste5g00768 407 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 304 - -
Pste5g00768 407 Coils Coil 348 368 - -
Pste5g00768 407 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Pste5g00768 407 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Pste5g00768 407 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Pste5g00768 407 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Pste5g00768 407 MobiDBLite consensus disorder prediction 128 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00768 Pste-Chr5 4927623 4928846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00768 40 118 AP2-EREBP Transcription Factor Family AT5G19790 74.684 1.89e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste5g00768 AP2 4.6e-15 CL0081