LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00735	ATGGTCGGAAATCTAGTATCAGAATCAGAACTCCGAAAGCGAGTGTGTTTGTTATTTGTGAGCATCTTCCTGACTCTCCCTGCCCTGTGTGTCTCGGTGGCATGTCCCCTGAACTTCAGCCTTCTCCGTTCAAAACCCTCGTTGGACTCCCTCACGCGGTGCCATGAGATCCTCGAAGCCATTCGTATTCTCCAATCCGATTACTTCCACCGCAAAGGTTCCTTCTTCCCTCCTTCAAACTCCTCCTTCAGCTGCTGGAACAATCTTCAATCTTTCATCGACCAATACGACATTCGCTCCTCTTGTAACATCCCTTCCTCCTCCATTTCCCCCTCCTGCCTCAACATTACAACCCGATCCCAGTTCGAATTATCTCTTCCAATTTCTGTTCTTAAACCCGTATGGGAAACTTGTAACCAATCTCTCAACACTCCCCGCACTTGTCATCTCTGCCAAAGAGCTTTGTCCACCTTGGATTCCCATCTCACTCATCAAACCGTTGATTGCAAGGCTGTTGCTTCTATCTATGCCGCTTCCTTCTCCGATCTTCGAGGCTTTGGAACCGCTAAGTGTTTGTTCAACATCCATGTCTCCTCTTCGCTTTCCAACGGTAAGCGTCGAACCATTCTTCTTGTCTGTTTTTTCGTCTCGGCCTTCTTCTTGCTGGCCTTCGGGCTTTTCTTTAGATTCAGGCACAAGATGGGTATTGGTAAAATTGAGATGGGTTTCGCTTCTATGAACCCCAGTACCACTTTGATTAGGTTCACTTTTGATGAGATTAAGAAGGCCACTAATAATTTCGCCGCTGCCAATATCATTGGGAAGGGGGGTTATGGGAATGTTTTTAAAGGGGTTCTGTCTGATGGGACTCAAGTTGCATTGAAAAGGTTCAAGAATTGTTCTGTTGCCGGGGATGCTAGCTTCACTCATGAGGTTGAGGTTATTGCCAGCGTTAGGCATGTCAACCTTGTTGCCTTGAGAGGTTATTGTACTGCCACAACCAATTTAGAGGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGTCTTTATGACCATTTATTTGGTTCTGCTAAGAAGAATCTCAGTTGGCCAATTCGTCAAAAGATTGCTTTAGGCACCGCTAGGGGGTTGGCTTATTTGCATTACGGGGCTCAACCTTCCATCATTCATAGGGATATTAAAGCTAGTAACATACTTTTAGATCACAAATTTGAGGCCAAAGTAGCTGATTTTGGATTGGCCAAGTTCAATCCTGAGGGAATGACTCATATGAGCACTAGAGTGGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCACCTGGATAATAATGGTCAACCCTCTGCGCTCACTGACTATGCTTGGTCACTGGTTAGGAATGATAGTGCTTTGGACGTTATTGAAAATGGTATGCTGGAACCTGGTCCAATAGAAGTTCTTGAGAAGTATGTCTTGGTTTCGGTACTATGTTGTCATCCACAATTACATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGCTGGAGACAGAACAGCCAATCTCTTCTATTGCTGACAAGATTGATGTTGATCCAATAGGCTAG	1683	0.4492	MVGNLVSESELRKRVCLLFVSIFLTLPALCVSVACPLNFSLLRSKPSLDSLTRCHEILEAIRILQSDYFHRKGSFFPPSNSSFSCWNNLQSFIDQYDIRSSCNIPSSSISPSCLNITTRSQFELSLPISVLKPVWETCNQSLNTPRTCHLCQRALSTLDSHLTHQTVDCKAVASIYAASFSDLRGFGTAKCLFNIHVSSSLSNGKRRTILLVCFFVSAFFLLAFGLFFRFRHKMGIGKIEMGFASMNPSTTLIRFTFDEIKKATNNFAAANIIGKGGYGNVFKGVLSDGTQVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKNLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALHLDNNGQPSALTDYAWSLVRNDSALDVIENGMLEPGPIEVLEKYVLVSVLCCHPQLHARPTMDQVVKMLETEQPISSIADKIDVDPIG	560

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00735	560	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	139	545	-	-
	Pste5g00735	560	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	348	549	-	-
	Pste5g00735	560	Gene3D	Phosphorylase Kinase; domain 1	238	346	-	-
	Pste5g00735	560	Pfam	SPARK	33	165	IPR043891	-
	Pste5g00735	560	ProSiteProfiles	Protein kinase domain profile.	267	528	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g00735	560	Pfam	Protein tyrosine and serine/threonine kinase	271	541	IPR001245	GO:0004672\|GO:0006468
	Pste5g00735	560	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	392	404	IPR008271	GO:0004672\|GO:0006468
	Pste5g00735	560	SUPERFAMILY	Protein kinase-like (PK-like)	246	542	IPR011009	-
	Pste5g00735	560	CDD	STKc_IRAK	273	542	-	-
	Pste5g00735	560	SMART	serkin_6	267	517	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g00735	560	ProSitePatterns	Protein kinases ATP-binding region signature.	273	295	IPR017441	GO:0005524
	Pste5g00735	560	Gene3D	Transferase(Phosphotransferase) domain 1	348	555	-	-
	Pste5g00735	560	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	231	346	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00735	Pste-Chr5	4766169	4767851	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00735	13	557	Receptor kinase-like Gene Family	AT2G48010	56.552	0.0	636

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RKF3	Pste5g00735		PK_Tyr_Ser-Thr	2.6e-43	CL0016