LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00732	CAGCACTCTCTGTTACAAGTCTCAAGAAGAAAACAAAGACTAAAATAAAAAAAAGATATTGCCTTTATGGCATTCCAGCTACCCAACTTTTACTTGCATCATGCAATGTTTGATTAAATTGCTGCTGTCCTTTGAGTGGATTGTTTTCATCTTGTGTCCCCATGTGATTTCAGTACACTTTTCATATACTTATACATTCCTTGTTGTGTTGCTGTTGCTTTCTCTTATCCCTCGCCCTTCTTTGCTTTTCTAAATTGTTTTCTACCAAAATTCTCTTCACACCTCCCTTAAGTACTACCATTCTCCACAGTACCCTTCAAATTATCCTCCTTGCTATTGTGGTACATTTGGATTTCTAATTTATTCTCTTTAAGTTCTGAGTTTGTGGTGGGTATCTGAAAATGAAGCACCAGGTGGATTCCCCTGTTGGTGTTCTTCAACACTATTTCAAGAGTTCAGAATCAGAAACAAGTTCATCCACACAACCTAGTACTACCGATTCTGATAAGTCAAAACCGGGTTCTGGGTGGCATGGGTTTCTTCAATTGTTGGGAGTTAAATCCAAGAAGCCAATAGCCACATTGCATCCTCTCAGCTTTCTTAAGCTTTATAGAAAAATGAGCACTAGCATGAGGGAGACTATGATAGATGCAGATTCGTCCTTGCACAGGTCACCCTGTAAGATCTTCACGCACCATGAGATACAGATTGCAACCAATTGCTTTGCCCAAGAAAATTTTATTGGGAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGTCAAATGGTCAGCTGGTAGCGATTAAACGGCTGACACGTGGAACAGAAAATGAAACTATTGGAGATTTCTTATCAGAACTTGGCATAATGGCTCATGTAAGCCACCCCAACACTGCTAAGTTAGTGGGCTATGGGGTGGAGGGAGGAATGCATTTAGTGCTGGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAGTGCTTAATGGTTCCAAGGAGAAGCTGCCATGGTCTCTGAGGCACAAAATAGCATTAGGGACAGCTAAGGGTATACTGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCATAGGGATATAAAAGCCGCAAATATCTTGCTTACAGAGGACTTTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAAAATTGGACCCATCACACCATTTCAAGAACTGAAGGGACTTTTGGTTATCTTGCTCCTGAATACTTGCTTCATGGGATAGTGGACGAGAAAACAGACGTATTTGCCTTTGGTGTAGTGCTATTAGAATTAGTCACAGGGCGGCGAGCACTTGATTCTTCACAACAAAGCCTTGTTTTGTGGGCAAAACCTTTGCTGAAAAAGAATTATATTAGGGAGCTGATTGATCCTTCACTAGCCGATGATTTTGACTGTCGGCAGATTAAAATTATGCTATTGGCTGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGTCCTTCTATGAAACAGGCACGTTGTACAGCTTTTGAGTGGCAATCTCAGCTGCTTTAAGTTCACGAAGAAATCTCAACTTCCATTCTTCCAAAAAGTCTTTCAAGAAGAGCTCTTTGGTTCACATTAATTAATTGAAAGGAACATAAATCATACGAGTGACAGCAACACTAAAATGTGATTAAATGATGATGGTCATGTATCTAATTCTTTTCAATTTTACATTTTTCTCCCCCCCAAAGCCATACGTCACTCAACAGCTTATGCACATAGGAATTGTCAATAACATAAGCCAATATTTCGTGGTTTCCTAACATAAGCATGATAATTGTCCCTTAAACAATGTC	1834	0.3997	MKHQVDSPVGVLQHYFKSSESETSSSTQPSTTDSDKSKPGSGWHGFLQLLGVKSKKPIATLHPLSFLKLYRKMSTSMRETMIDADSSLHRSPCKIFTHHEIQIATNCFAQENFIGKGGYAEVYKGCLSNGQLVAIKRLTRGTENETIGDFLSELGIMAHVSHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWSLRHKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTISRTEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDSSQQSLVLWAKPLLKKNYIRELIDPSLADDFDCRQIKIMLLAASLCIQQSSIRRPSMKQARCTAFEWQSQLL	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00732	381	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
	Pste5g00732	381	ProSitePatterns	Protein kinases ATP-binding region signature.	114	136	IPR017441	GO:0005524
	Pste5g00732	381	Gene3D	Transferase(Phosphotransferase) domain 1	185	379	-	-
	Pste5g00732	381	Pfam	Protein tyrosine and serine/threonine kinase	111	317	IPR001245	GO:0004672\|GO:0006468
	Pste5g00732	381	ProSiteProfiles	Protein kinase domain profile.	108	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g00732	381	Gene3D	Phosphorylase Kinase; domain 1	78	182	-	-
	Pste5g00732	381	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK2	78	182	-	-
	Pste5g00732	381	MobiDBLite	consensus disorder prediction	17	40	-	-
	Pste5g00732	381	SUPERFAMILY	Protein kinase-like (PK-like)	88	374	IPR011009	-
	Pste5g00732	381	SMART	serkin_6	108	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g00732	381	MobiDBLite	consensus disorder prediction	17	38	-	-
	Pste5g00732	381	PANTHER	OS08G0249100 PROTEIN	6	368	IPR046958	-
	Pste5g00732	381	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	185	374	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00732	Pste-Chr5	4736174	4739449	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00732	95	374	Trihelix Transcription Factor Family	AT1G68690	41.522	1.36e-66	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Pste5g00732		PK_Tyr_Ser-Thr	1.2e-40	CL0016