Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste5g00715 | GCGATGATAACCCCTGGCACAAGAGTGTTGGATCATATAATAAGTTGGTGTGTCTGTAGAAAGCATGGAGTGCGTGCTAGTTTAGCTAGTTGAATATCTCTTCTCCACAATTTTCAATCTTGATAGTGGAAACCATGCCATAAATTGAAATCCTCATAGCCATGGACTACACCAATTGGGCTGAATCGCTCCAAGCAGAAAACTCATTACCGCAACCTTGTACAGCGCCCTCATCATATCCTCCTCAACCTACCCACTATCCCTCTTACCCTCAAAACCCTAACCCCTCTTCTCTTCCCCCCAACCCTCCTGGGGTTGATTCCCAATTCCAATTAAACCCTATTATCATAGCCGCTCATGAAACCGTTCCCGCTTTGATCTACCCTCAGACTCATCTTGGAGCTAATTCCAACTCCTTGCTCTCATCTTCTGCCTACTGCTTGGACCAGAATTGGGCTGCCAGAGAGGCTGTTAGGCAATTCGGTTCTGACCCCACTATTTTTGCACCTGGCATCTCTGTGCCATCGAATGGCTCAGAACAATTGGCTATGGCAAATACTAGCTCTTTGTGGTGGACAAATACCTTAATTCAATCTCACGGCAATGGAATACAGAAGAAAGCTAAAACTAAGGTTGTGCAATCTGCATATTGTGAAGTTTGCAAGATAGAATGCACCAGCAAAGAAGTTCTGGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACTTGGTGAAACTAAGAGAATCATTGACACCGACCCAAGTTCTACCATCTGTGTCATCTAAACCTGTAATAGGACCCCAATTACCAGATGACAAGAGCAAATTCATTAGTGGGAACAAGAGTAAGAGAAAAAAAGTTGAAACTGCTGAGGATTTGGAGAAAAAGAAAAAGAAGGTTCTTGACGGTGGGGCAGCAGCTGATGCAGTTAAGATATGTGGTATATGTAACGTGGTGTGTAACAGTGAGACTGTTTTTAATTATCATCTAGCAGGACAAAAGCATGCTGCCATGCTGAAGAAAGCATCTGAAAAATCCAATGCCTATTGAATTTTCCCCATTTACTTAGGAACATTAGTTGTTCTAGACCTCCATTCTTCATTTGAATAGAATATCACTGGTTAATTTCAGTTTGAACTTCAAATGGGCTGAGCATATAATACAGTTTTACATTATTTTAGCGATTGAGATGCATTAGACCGTCGTCTCTGCAAGAACAATCTTGCAATGCCAGCAACTATTTCTTTTTATGGACTACCAGGAATAACTATCAAATGATCAAAAAGACTTTTTTTG | 1298 | 0.4137 | MDYTNWAESLQAENSLPQPCTAPSSYPPQPTHYPSYPQNPNPSSLPPNPPGVDSQFQLNPIIIAAHETVPALIYPQTHLGANSNSLLSSSAYCLDQNWAAREAVRQFGSDPTIFAPGISVPSNGSEQLAMANTSSLWWTNTLIQSHGNGIQKKAKTKVVQSAYCEVCKIECTSKEVLDQHKLGKKHKKNLVKLRESLTPTQVLPSVSSKPVIGPQLPDDKSKFISGNKSKRKKVETAEDLEKKKKKVLDGGAAADAVKICGICNVVCNSETVFNYHLAGQKHAAMLKKASEKSNAY | 296 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste5g00715 | 296 | Gene3D | Classic Zinc Finger | 228 | 290 | - | - | |
| Pste5g00715 | 296 | Gene3D | Classic Zinc Finger | 144 | 192 | - | - | |
| Pste5g00715 | 296 | SMART | ZnF_U1_5 | 159 | 193 | IPR003604 | GO:0003676|GO:0008270 | |
| Pste5g00715 | 296 | SMART | ZnF_U1_5 | 255 | 289 | IPR003604 | GO:0003676|GO:0008270 | |
| Pste5g00715 | 296 | SUPERFAMILY | beta-beta-alpha zinc fingers | 256 | 289 | IPR036236 | - | |
| Pste5g00715 | 296 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Pste5g00715 | 296 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Pste5g00715 | 296 | SUPERFAMILY | beta-beta-alpha zinc fingers | 152 | 193 | IPR036236 | - | |
| Pste5g00715 | 296 | PANTHER | ZINC FINGER PROTEIN 385B-LIKE | 34 | 293 | - | - | |
| Pste5g00715 | 296 | Pfam | Zinc-finger of C2H2 type | 259 | 282 | - | - | |
| Pste5g00715 | 296 | Pfam | Zinc-finger of C2H2 type | 163 | 186 | - | - | |
| Pste5g00715 | 296 | SMART | c2h2final6 | 162 | 186 | IPR013087 | - | |
| Pste5g00715 | 296 | SMART | c2h2final6 | 258 | 282 | IPR013087 | - | |
| Pste5g00715 | 296 | MobiDBLite | consensus disorder prediction | 21 | 49 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste5g00715 | Pste-Chr5 | 4663442 | 4666509 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste5g00715 | 164 | 293 | C2H2 Transcription Factor Family | AT5G61190 | 29.932 | 3.35e-08 | 52.8 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pste5g00715 | 5 | 4663442 | 4666509 | Pste5g00715 | 5 | 4663442 | 4666509 | ECH |