Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00711 GTCCTTCTCCCTGATCTTACCCTTATAATCAATTGTGATGGTGATGGCTAGGTGTCACTCTTTGGTTCCTTTGGCCTTTTTAATGGTTCTGTTTGTACCAGCCTTATCAAGTGAATATGGTGATGAATGGCACACTGCCCATGCAACTTTCTATGGTGACATGCAAGGTGGAGAAACCATGCAGGGTGCTTGCGGATATGGTGATCTGAACGAGCAAGGGTATGGGCTGGAAACGACAGCACTAAGCACAGCCCTATACAAAAATGGGGAGAGTTGTGGAGCATGTTTTGAGATTAAGTGTGTAAACGACGAAAAATGGTGCATAGCAAACGCAGGGACTATAAAAGTAACAGCAACGAATTTTTGTCCACCAAACTACGAGGCTCCGAATTTGGATCACTGGTGCAACCCTCCAAAAGAGCACTTCGACCTGTCGATGAAAATGTTCACGACAATAGCGTACTACAAAGCAGGGATAATACCGGTGGAATACCGACGAGTGCCGTGCATAAAAAGTGGTGGTATCAAGTTTGAGTTGAAAGGGAACCCTTATTGGTTGCTGGTTTTGGTGTACAACGTTGGCAACGCTGGTGATGTTTCTCAAGTCAGCATCAGAGCCTCAAACTCTGCCTCTGCATGGCAACCCATGTCACGTGTCTGGGGACAGAATTGGGTTACTGCCTCTAATTTCCTCGGACAACCACTCTCCTTTCAGGTTACTACCACTGATGCTAAAACGTTGCAGTTTTACAATGTCGCACCTTCCAATTGGCAATTCTCACAAACTTATCAGGCCAACAATAATTTTTAGATCCCCTCTTTCTTCAACTTACCCCTAATATCAATAATTAATTCCTCTTATACTACCTCTTCATTTCCTCCCCTTTTTATTCCATTTCACCACCTAATTCTAATTTACAGCCTACTATTTCTCTTAGTATGGATTTAATGACCTTTTAAACCTCTTTTTTTTTTTTTT 979 0.427 MVMARCHSLVPLAFLMVLFVPALSSEYGDEWHTAHATFYGDMQGGETMQGACGYGDLNEQGYGLETTALSTALYKNGESCGACFEIKCVNDEKWCIANAGTIKVTATNFCPPNYEAPNLDHWCNPPKEHFDLSMKMFTTIAYYKAGIIPVEYRRVPCIKSGGIKFELKGNPYWLLVLVYNVGNAGDVSQVSIRASNSASAWQPMSRVWGQNWVTASNFLGQPLSFQVTTTDAKTLQFYNVAPSNWQFSQTYQANNNF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00711 257 PANTHER EXPANSIN-A15 13 255 IPR002963 GO:0009664
Pste5g00711 257 Pfam Lytic transglycolase 66 152 IPR009009 -
Pste5g00711 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Pste5g00711 257 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Pste5g00711 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Pste5g00711 257 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Pste5g00711 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Pste5g00711 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Pste5g00711 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 162 IPR007112 -
Pste5g00711 257 SMART dpbb_1 66 152 IPR007112 -
Pste5g00711 257 Gene3D - 162 257 IPR036749 -
Pste5g00711 257 Pfam Expansin C-terminal domain 163 242 IPR007117 -
Pste5g00711 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Pste5g00711 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 253 IPR007117 -
Pste5g00711 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Pste5g00711 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Pste5g00711 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Pste5g00711 257 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Pste5g00711 257 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Pste5g00711 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Pste5g00711 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Pste5g00711 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Pste5g00711 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Pste5g00711 257 CDD DPBB_EXPA_N 30 157 - -
Pste5g00711 257 Gene3D - 19 157 IPR036908 -
Pste5g00711 257 SUPERFAMILY Barwin-like endoglucanases 15 180 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00711 Pste-Chr5 4611137 4612972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00711 31 257 Expansin Gene Family AT5G39290 57.709 6.41e-99 288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00711 5 4611137 4612972 Pste5g00711 5 4611137 4612972 ECH