Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00676 TGAGCGTGGAGTTTTAATTTTAAGGGTTTTAGGGTTTAGCAGATTCATTTTCTCCCTACACAAACCGGAATAGAAGAGAAGCACCACCGTGCTTTTCACGGGTGGTAAGGTCTCAAGTTCACAACTTTCTTTCATCCCCTTTTTCCTATTTTCATTACTTTTTCACCGTTGTTCTCTCAAAGCTTGTTTCCTTTTTCTCTCGCCGCATCCCCTTGTTATTGGTTTTGTAGCGCTTACAAATTTTTCTCCTTGGTTATGTGTTTTATGCAATATTTGATTTTTAAGATCCGCAAGACTTCTTTTGTGTAAAATACTAGTGGGTATTCTCAATTTTGTTTCTGATCACTGTTTTAACGTTTTTGGTTTAGTTGTGGTAAATCGATTGCACGCATGATATGAGCATGTATTCATTATAAATAGAGTTTTGTGAGGCAGTGTCATTCTAGTGCGGCAAATTTTTGGGTGCAAAAGACTATTATAAGTTTGTAATTTTAATTGTGAATAATTTCTTCTGATAATGATACTGAAAGCATCTATTCATAAATCCATAGCTACTATGAGATCATCGCTAATGTGTAAGAAAGTGAACTGAGGGTGGAACATCTGTGTGCTGAAGAGCACTAGTTACAATGAATAATTAATGTACTGTATTAGCCTTTTGCCATGTGATGCTTTTGTAGGTTTGAGCAATGGCGTTCTTAAATAAAATTGGAAATCTGCTCAAGAATTCTGCTGTCAGGAACATCAATCAAGATTTTTCTGTGTCTACTCCTTCACTTTTGCAAGCAGTTAGATCCATGTCATCTGCAAAGCTTTTCGTGGGAGGTATTTCTTACAGCACTGATGATATGAGTCTGCGAGAGTCTTTTGCTCGCTATGGGGAAGTAATTGATGTTAAGGTTATTATGGATCGTGAAACTGGCAGGTCAAGAGGTTTTGCCTTCATAACTTTTGCAACAAGTGAGGATGCATCTGCTGCCATTCAGGGCATGGATGGCCAGGATCTTCATGGTCGGAGGATAAGGGTGAATTATGCTACAGAAAGGTCACGTCCTGGGTTTGGTGGTGGTGGCAGTGGCTATGGTGGAGGTGGATATGGAGGTGGTGACGGTGGCTATGGTGGAGGTGGATATGGTGGCGGTGGTGGTGGCTATGGAAGAGGTGGCTATGGTGGTGGTAATTATGGAGATAATGATAATAGGGGTGGAAACTATGGAAGTGGTGGATATGGTGTAACAAGCAGCTATGGTGGTGGTCATGCTGAAACCAGTTACCCTGGTGGTGCTGGTGCAAGCAATTACCACTTCGATGAAAATTCTGGAGACAACAAAAATTACGGAACAGATGCAGACAATGATGGATTTGTTGATCTACCTAAAGACAATGTGAGGGATAACCATGATGAACCTGATAACTACGCTCAGAACCGGGGGTGAGAATTTTCACCTTACCTAGCTAGTAACCTATGGGGTTGACTATAAACAAATGTGTTTCAAATTTCTATTTTTACCCTCTTGATTTTCATAAGTTCATTGTTTGGCTTGAACTTGAGTTTGTCAGCTCAACAACTGATGTAAAATAAGATTTTTCTAAGAGTTGAATTTCATTGAGAAGGATTTTATTTTTCAACCAATCAACACCTG 1643 0.3962 MAFLNKIGNLLKNSAVRNINQDFSVSTPSLLQAVRSMSSAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFAFITFATSEDASAAIQGMDGQDLHGRRIRVNYATERSRPGFGGGGSGYGGGGYGGGDGGYGGGGYGGGGGGYGRGGYGGGNYGDNDNRGGNYGSGGYGVTSSYGGGHAETSYPGGAGASNYHFDENSGDNKNYGTDADNDGFVDLPKDNVRDNHDEPDNYAQNRG 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00676 248 SMART rrm1_1 41 114 IPR000504 GO:0003723
Pste5g00676 248 Gene3D - 15 137 IPR012677 -
Pste5g00676 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Pste5g00676 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Pste5g00676 248 MobiDBLite consensus disorder prediction 174 248 - -
Pste5g00676 248 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Pste5g00676 248 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 139 - -
Pste5g00676 248 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 197 - -
Pste5g00676 248 MobiDBLite consensus disorder prediction 224 248 - -
Pste5g00676 248 PRINTS Eggshell protein signature 155 165 - -
Pste5g00676 248 PRINTS Eggshell protein signature 187 205 - -
Pste5g00676 248 PRINTS Eggshell protein signature 126 141 - -
Pste5g00676 248 PRINTS Eggshell protein signature 36 52 - -
Pste5g00676 248 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00676 Pste-Chr5 4409882 4412690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00676 29 119 Eukaryotic Initiation Factors Gene Family AT1G49760 34.066 3.29e-08 52.0