Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00613 AAAAAAGGAAAATAATAAACCAAGGGAAGAAAGAAACAGAGCACAATACAAGGAAATCCTTAGATTTCGAAGCAGAGGAAGGACAAGAACAAAAAACGTTGTATTGTTCAGCATCCATATGCATACCAACAAGACACGCTTTTTTGTTCAATCTCAATAGCGGGGGGGTAATTTCCGTAACTCCCGGAACTCTTTCTTCGATGCGTTTCTCGTCGCTAGTTTCACTTGCATTATGTTTTGTATTTTTTCCTTCTTCTTTTGTGCCCCAATTTGTTTTGTTTGTGACACACGCACGCAGATAAGGCTTGGAATTATCAACTGGGTATTTTGTTATTTATTTATTTGTGTGTTTTTGAATTTTCCCATCTTGTGGATTTTGTTTCTTCGTCTGATCGGGAATGATTTTAAACTTATGTGTTCACAGATTTGTCTGCATTTGTCTGTCATGTGATTACTTTTTGTAGCTCTGTGGTTCTATACGTATGGGGTTGTTTTCTTGCATATAATAAATTGGTATTTGTGTTGTTGTTTTGAGATATTATTCTTACATTTTTGTTTTTCTGTTTGTTCTGGTTTTTTATTGGCTGGATGGAGAAGAAAAATGTATTTTTGTCAAAAAGCCAACCGCAATGCTCATGCTGCTTAATTGAAGTTTTGGGGTTCTTCATTTATAACTGTGATTTTCCGTCTCCTTTTGAATTTTGATGTCTTTGATGGATAATTTGAACGAGGGAAGAGATGTAGCATGCCATAAAAGTAAGAGATCTGGTTCCTTGTCATCTGGCAAGAAGTACTGTAGATCTGGGATAGGAATGGCTCCTGTAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCATCTGATGTCTTCAGATTACGAAACGGGAAAGGCTAAATCTGAGGCCAAGGGCAACAGTACATCCACAAAATCTAGTGTTGGGTTGAATGGAAAAAATGGAATTAGTTCAAATAATGGTGTGTACGAATTGCTTGGATGTCCAGTTTGCAAGAATTTAATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCACGTTGTAAAGTTGAAGTTCATAATATCTGCCCATCCTGTCATCATGATCTTGGAAATATAAGGTGTTTGGCTTTGGAGAACGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATATTCCCGTACTATACTAAGCTCAAGCATGAGCAAAATTGTGGATTTCGTCCATACCATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGACATTCCAACTCTTGTTGCCCATCTCAAGGACGATCACAAAGTTGATATGCATGATGGATGCACCTTCAATCACCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACGTGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCCTGCACTTTGAGGCGTTCCAGCTTGGGTCAGCTCCAGTGTATATGGCTTTTTTGCGATTTATGGGTGATGACAATGAAGCAAAGAAATTTAGCTACAGCTTGGAGGTTGGTGCAAATGGCCGCAAACTTATATGGCAAGGAATCCCAAGGAGCATTAGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATCCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAGGAGTTGAAGCTGAGAATCACTGGTCGTATATGGAGAGAAGATTGAGACATGTAAATATAACATTATTAGAGATGTAACCATTCTTTTAAGGTTTTGGTCTCTCGCAAAGAATGAAGCATTATGTCTGCTTATCTCTCCAAAGATTTGTCTTTCATCGCCACATAGCTTTGTCTTTAGTCATGAGGCTTCTATCAATTTGGCCCAGCTTTCTTTCCTTTTTGGACAAAATTATGTGCTTCTGAATATTGGAAATCAAAAAACTTACACGCGCAAGTTACTA 1977 0.3854 MSLMDNLNEGRDVACHKSKRSGSLSSGKKYCRSGIGMAPVSSVFKEVLESHLMSSDYETGKAKSEAKGNSTSTKSSVGLNGKNGISSNNGVYELLGCPVCKNLMYPPIHQCPNGHTLCSRCKVEVHNICPSCHHDLGNIRCLALENVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYHCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWRED 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00613 345 FunFam E3 ubiquitin-protein ligase SINAT5-like 206 338 - -
Pste5g00613 345 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 208 338 IPR008974 GO:0005515
Pste5g00613 345 SUPERFAMILY TRAF domain-like 150 342 - -
Pste5g00613 345 FunFam E3 ubiquitin-protein ligase SINAT5-like 49 148 - -
Pste5g00613 345 ProSiteProfiles Zinc finger SIAH-type profile. 150 210 IPR013010 GO:0008270
Pste5g00613 345 MobiDBLite consensus disorder prediction 59 80 - -
Pste5g00613 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 185 IPR013083 -
Pste5g00613 345 ProSiteProfiles Zinc finger RING-type profile. 97 133 IPR001841 -
Pste5g00613 345 SUPERFAMILY RING/U-box 89 139 - -
Pste5g00613 345 MobiDBLite consensus disorder prediction 64 80 - -
Pste5g00613 345 FunFam E3 ubiquitin-protein ligase SINAT3 149 205 - -
Pste5g00613 345 Gene3D Classic Zinc Finger 186 207 - -
Pste5g00613 345 MobiDBLite consensus disorder prediction 1 28 - -
Pste5g00613 345 Pfam Seven in absentia protein family 139 338 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pste5g00613 345 CDD RING-HC_SIAHs 95 133 - -
Pste5g00613 345 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 67 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00613 Pste-Chr5 3965467 3970101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00613 37 345 C3H Transcription Factor Family AT2G41980 78.964 0.0 511