Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00593 GGAAATGATGGCAACACAGAAAGGGTTGAGGAAAGGCCCTTGGAGTGGTGAAGAGTACAGGTTGCTAAATGAATATGTTAGTTTGCATGGGGAGGGACTCAAGAAAGGTCAATTAACATATCTGGAAGAAGGAACCATTATTGAACAACATGCAATTTTGGGTAGAACTGATAACGAGATTAAGAACTATTGGAGAACCCACTTTGGGAAGAGGGAGAAATACAAATACAAGAAACTACAAAGGGGAGGACAACAACCCGAGTATGGTATAAAAAGCAAGTGTCAGAAGGAGACCATAAATGAAACAAAATCCTTTGAGAAACAAAATAATATTCAACCTTTTGCAGATCATATCAATCAGTTTAGTAAACGTGCCATGCAAAATCAAGCTACATTTGGAGTTGGTGGGGATTCCATGCAAAATCATCATAAAACTTCTTACTTTGACCATACATATGATAAACTCTTTTACTTACCTTCCTTGAACAATTTTGGAGCACAGCCAAGAATTATGGATCATACACTTGTTGGATTAGCATTGGATCAAAAGCTACTTTCAAGGGAACAAGGCACTCAAGAAACCGCAGGATCATATATAGAAGTTAACAGTAAAGTGATATATATTATTATGGAAGCTATGATGGGTTCCCTAGCAACCGAGAAAGAGTGGAAGAAAGGCCCTTGGACTGGTGAAGAGGACAAGTTGCTAACTGAATATGTTACCTTGTATGGGGAGGCATTAAATAGGAGTGGCAAAAGCTGCAGATTGAGATGGGTAAATTATTTGAGGCCCGGTCTCAAGAAAGGTCAATTAACACCTCTAGAAGCAGGAATCATTATTGAACTACATGCAATTTTTGGTAACAAGTGGTCTACAATAGCAAAGTATTTGCCAGGAAGAACTGATAACGACATTAAGAACTACTGGAGAACTCACTTTGGGAAAAGTGAGAAATCCAAACACAAGAAGCTACAAATACAAAAAGCATGTGTGCTACAACAGTTAAAACATAAGCAGCAACCTCAAGGGTATGGTATCGAAAGCACACCTCACGAAGAGACAAAAAATGAAACAACATCCTTTGAGACACAAAATAATAAGCAACAAGAAATGGGTTTCATGTTTCCAATAATAGAGGACCAACATATTGTTCCTTCACTATTACATGATGAATTCTCATCCACG 1186 0.3803 MMATQKGLRKGPWSGEEYRLLNEYVSLHGEGLKKGQLTYLEEGTIIEQHAILGRTDNEIKNYWRTHFGKREKYKYKKLQRGGQQPEYGIKSKCQKETINETKSFEKQNNIQPFADHINQFSKRAMQNQATFGVGGDSMQNHHKTSYFDHTYDKLFYLPSLNNFGAQPRIMDHTLVGLALDQKLLSREQGTQETAGSYIEVNSKVIYIIMEAMMGSLATEKEWKKGPWTGEEDKLLTEYVTLYGEALNRSGKSCRLRWVNYLRPGLKKGQLTPLEAGIIIELHAIFGNKWSTIAKYLPGRTDNDIKNYWRTHFGKSEKSKHKKLQIQKACVLQQLKHKQQPQGYGIESTPHEETKNETTSFETQNNKQQEMGFMFPIIEDQHIVPSLLHDEFSST 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00593 394 MobiDBLite consensus disorder prediction 340 362 - -
Pste5g00593 394 ProSiteProfiles Myb-like domain profile. 219 312 IPR001005 -
Pste5g00593 394 Gene3D - 269 341 - -
Pste5g00593 394 Gene3D - 7 72 - -
Pste5g00593 394 SUPERFAMILY Homeodomain-like 6 70 IPR009057 -
Pste5g00593 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 316 IPR017930 -
Pste5g00593 394 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 32 126 - -
Pste5g00593 394 SMART sant 9 69 IPR001005 -
Pste5g00593 394 SMART sant 266 314 IPR001005 -
Pste5g00593 394 SMART sant 223 263 IPR001005 -
Pste5g00593 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 219 261 IPR017930 -
Pste5g00593 394 CDD SANT 271 312 IPR001005 -
Pste5g00593 394 ProSiteProfiles Myb-like domain profile. 5 67 IPR001005 -
Pste5g00593 394 Pfam Myb-like DNA-binding domain 269 311 IPR001005 -
Pste5g00593 394 Pfam Myb-like DNA-binding domain 224 261 IPR001005 -
Pste5g00593 394 Gene3D - 223 266 - -
Pste5g00593 394 SUPERFAMILY Homeodomain-like 222 308 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00593 Pste-Chr5 3839421 3850225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00593 223 384 MYB Transcription Factor Family AT3G30210 51.136 5.41e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g00593 Myb_DNA-binding 2.4e-11 CL0123