Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00588 ATGGAGGAAGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGAGCCCGAAACTGAGGCCATAAGCAATGAAACTGTGAGCTTGGAAGATTGGATAGGGGAGCCTCTTCAGAGAATTAGCGAAGCTATGAGGTTCAGGGCACGGCAACGGTGGCGATGGCGCCATCTTCCTCTGCAGCATCAGGATGTTCATGTGCACTTTCCAACTGAACATGTGCGGCATTTTCAAATCCCACCCGAGGCTCACAATATCTCTGTGGAATTGAACCAGTTTTTGGTCAATTCTGCTAATGGAAGCGCCTTACAGCCTGGGGAAGGCAGCGTGGCCGCCGAGGAGAGAATGGAAGAGGCCCCAAAGGCTTGTGAGAATGTCAATGGTGTGGCAGAGGATGACGCTTCACAGAAGAAGGATGAAGTTGAAAAGGGTAATGGCAATGAAGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTGGCAAGGGATCCTGTTGTTACTTGTTGTGGTCATCTGTTCTGTTGGCCTTGTCTGTATCGATGGTTGCATCTGCATTCAGACGCCAAGGAATGTCCAGTTTGCAAGGGAGAGGTGACTCTTAAAAGTGTTACCCCAATTTATGGCCGTGGGAACAATGTCCGCACTACTGAGGAGGATTCTGCTCTTAAGATCCCTCCCCGGCCCCAAGCTAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGACATTAGTCGAGATTTGATTCAGTCACAGGAACAGGAAGGTGCCCGTGAAACAGCGGAGAGAACTACCTCCTTGCTAAGTAGGTTCTTAACTGCTCGAGGGATTAGGAGGGAGCAGAATATAGGAGCACCCCCTGAGGATGTAATTGGTTTGGCACAGAACAATGTTAATACTTCTGAGGCGGGAGAAATCCGCGGTAGGGTGCAATCCCTCTTGCTCCGGAGAACACAATCACATAGACACACACTTTCTACTCTTTCATCAGCACTGAATTCTGCTGAAAGGTTAGTTGAGGCGTATTTCCGTAGCAATCCATTAGGTAGGAACCAAGAACAACCTCCACCTCCAGTTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGAGCGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCAAGGCGCAGACGTTTAAACTGA 1329 0.4838 MEEETSDAMNLDLNLGPGPEPETEAISNETVSLEDWIGEPLQRISEAMRFRARQRWRWRHLPLQHQDVHVHFPTEHVRHFQIPPEAHNISVELNQFLVNSANGSALQPGEGSVAAEERMEEAPKACENVNGVAEDDASQKKDEVEKGNGNEGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNVRTTEEDSALKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDISRDLIQSQEQEGARETAERTTSLLSRFLTARGIRREQNIGAPPEDVIGLAQNNVNTSEAGEIRGRVQSLLLRRTQSHRHTLSTLSSALNSAERLVEAYFRSNPLGRNQEQPPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRASDVDSGDSRAPRRRRLN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00588 442 SUPERFAMILY RING/U-box 153 210 - -
Pste5g00588 442 MobiDBLite consensus disorder prediction 367 386 - -
Pste5g00588 442 MobiDBLite consensus disorder prediction 420 442 - -
Pste5g00588 442 MobiDBLite consensus disorder prediction 1 22 - -
Pste5g00588 442 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Pste5g00588 442 CDD RING-HC_AtRMA-like 155 198 - -
Pste5g00588 442 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Pste5g00588 442 FunFam E3 ubiquitin-protein ligase RMA3 125 246 - -
Pste5g00588 442 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Pste5g00588 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 124 330 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pste5g00588 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 226 IPR013083 -
Pste5g00588 442 SMART ring_2 157 197 IPR001841 -
Pste5g00588 442 MobiDBLite consensus disorder prediction 409 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00588 Pste-Chr5 3776283 3777611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00588 1 433 C3H Transcription Factor Family AT3G58030 53.007 3.90e-141 409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00588 5 3776283 3777611 Pste5g00588 5 3776283 3777611 ECH