Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pste5g00588 | ATGGAGGAAGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGAGCCCGAAACTGAGGCCATAAGCAATGAAACTGTGAGCTTGGAAGATTGGATAGGGGAGCCTCTTCAGAGAATTAGCGAAGCTATGAGGTTCAGGGCACGGCAACGGTGGCGATGGCGCCATCTTCCTCTGCAGCATCAGGATGTTCATGTGCACTTTCCAACTGAACATGTGCGGCATTTTCAAATCCCACCCGAGGCTCACAATATCTCTGTGGAATTGAACCAGTTTTTGGTCAATTCTGCTAATGGAAGCGCCTTACAGCCTGGGGAAGGCAGCGTGGCCGCCGAGGAGAGAATGGAAGAGGCCCCAAAGGCTTGTGAGAATGTCAATGGTGTGGCAGAGGATGACGCTTCACAGAAGAAGGATGAAGTTGAAAAGGGTAATGGCAATGAAGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTGGCAAGGGATCCTGTTGTTACTTGTTGTGGTCATCTGTTCTGTTGGCCTTGTCTGTATCGATGGTTGCATCTGCATTCAGACGCCAAGGAATGTCCAGTTTGCAAGGGAGAGGTGACTCTTAAAAGTGTTACCCCAATTTATGGCCGTGGGAACAATGTCCGCACTACTGAGGAGGATTCTGCTCTTAAGATCCCTCCCCGGCCCCAAGCTAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGACATTAGTCGAGATTTGATTCAGTCACAGGAACAGGAAGGTGCCCGTGAAACAGCGGAGAGAACTACCTCCTTGCTAAGTAGGTTCTTAACTGCTCGAGGGATTAGGAGGGAGCAGAATATAGGAGCACCCCCTGAGGATGTAATTGGTTTGGCACAGAACAATGTTAATACTTCTGAGGCGGGAGAAATCCGCGGTAGGGTGCAATCCCTCTTGCTCCGGAGAACACAATCACATAGACACACACTTTCTACTCTTTCATCAGCACTGAATTCTGCTGAAAGGTTAGTTGAGGCGTATTTCCGTAGCAATCCATTAGGTAGGAACCAAGAACAACCTCCACCTCCAGTTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGAGCGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCAAGGCGCAGACGTTTAAACTGA | 1329 | 0.4838 | MEEETSDAMNLDLNLGPGPEPETEAISNETVSLEDWIGEPLQRISEAMRFRARQRWRWRHLPLQHQDVHVHFPTEHVRHFQIPPEAHNISVELNQFLVNSANGSALQPGEGSVAAEERMEEAPKACENVNGVAEDDASQKKDEVEKGNGNEGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNVRTTEEDSALKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDISRDLIQSQEQEGARETAERTTSLLSRFLTARGIRREQNIGAPPEDVIGLAQNNVNTSEAGEIRGRVQSLLLRRTQSHRHTLSTLSSALNSAERLVEAYFRSNPLGRNQEQPPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRASDVDSGDSRAPRRRRLN | 442 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pste5g00588 | 442 | SUPERFAMILY | RING/U-box | 153 | 210 | - | - | |
Pste5g00588 | 442 | MobiDBLite | consensus disorder prediction | 367 | 386 | - | - | |
Pste5g00588 | 442 | MobiDBLite | consensus disorder prediction | 420 | 442 | - | - | |
Pste5g00588 | 442 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Pste5g00588 | 442 | ProSiteProfiles | Zinc finger RING-type profile. | 157 | 198 | IPR001841 | - | |
Pste5g00588 | 442 | CDD | RING-HC_AtRMA-like | 155 | 198 | - | - | |
Pste5g00588 | 442 | Pfam | Zinc finger, C3HC4 type (RING finger) | 157 | 197 | - | - | |
Pste5g00588 | 442 | FunFam | E3 ubiquitin-protein ligase RMA3 | 125 | 246 | - | - | |
Pste5g00588 | 442 | ProSitePatterns | Zinc finger RING-type signature. | 172 | 181 | IPR017907 | - | |
Pste5g00588 | 442 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 124 | 330 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Pste5g00588 | 442 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 226 | IPR013083 | - | |
Pste5g00588 | 442 | SMART | ring_2 | 157 | 197 | IPR001841 | - | |
Pste5g00588 | 442 | MobiDBLite | consensus disorder prediction | 409 | 442 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pste5g00588 | Pste-Chr5 | 3776283 | 3777611 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pste5g00588 | 1 | 433 | C3H Transcription Factor Family | AT3G58030 | 53.007 | 3.90e-141 | 409 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pste5g00588 | 5 | 3776283 | 3777611 | Pste5g00588 | 5 | 3776283 | 3777611 | ECH |