Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00576 AGAAGAAGAGAGAGAAATGTTTTGCTTCCTCTAATCTGGCGAATCGTTGGTTCTAACCATTTTTTATTTTCGCCCAAAACCCCCCTTTTAGAAAAACACCATTTCCTAACTCATAACCTTCTCAATCTTCTGCAGATTCATTATCCTCTATCTCTTCTCCCAACAACAATTCCATTCAAAGCTGTCTCTCACCTTCAGGTGATCAAGAGAGTCAGAGTTTGCTTATCCATATAACAGATAATCTGAACAGAAGAGGGAGGGTAAAGGTTTGCGGAGGCAACCTGACTTCTGCGAGCTTTGAATCCTCTCTCCGTTATTTATTGAAAACATAGTCATTAGTCTAGTGCTGTTGGGAGCTCTTTTTCTCAAAGTGTGCATGTAGCAACATCAATGTTTGAGGAGTGAGAAAAATTTAGTTGAAAGAGAGGAATTGAAGCTGAAACAATGGGTTCAGTTTGTTGCTGTTTGAGTGTTGATGATTTTGAAGATTATGTGAATCCAAATAGTCCTGTATATAGGAACTGTATGTGTCTTAGTTGCTTTGTACAGAACTTTCTGACTATGGTATGTCTCTAACTCCAAACTCTCTGTCCTCTTCCATTCTCATGTTTTCTTTTGATTCACTTTTGGACCCTGTCGTATGTGTCGTTGTCCATATTCCATAGTTTGAATTTGATGTAGTGCTTTGTGGTCATGGCTTGATGCACTGTTCTTGCTGGGAATTCTGTACTTCTGAAGTGGCCAACACATCTGTTACATTTGCAGGAGCTTGAGTTGTTTTTTATTAGTATTGTTGTACATATACTTCCTCTTTATTGTTCCTTTGCTCAGGACTATATAATGTGAATAAGGTACTCATAATTGTAGTCATATACGGGGATTGTTGCCATTTTTTATTTTATTTAATGTTTTGGAAAACCTTTAGTTTGGAATTATTTGTCCCAATCATTCAAAACATTACAAATTGTGATACACTTCATATATGCATTTTTGCTAATCTAAATTTAAGTTACCTCTTAACTCATTCTGTAGGGTTATTTTTCATGAAGCCCTGGTGCTAACTTGCTTATTAGTTGTTAGAGGGCCATAAAAAATTAAATAAGAAGAAAATTTAATCACCTATAATCTAGTTTAGGAAAGCTTTGCTGCATCTTTTAATATAAGTAATTGGATATTAATTCGGTTGTATTGATTGCTATGTACATTGATATTTCAGGAGGGAATATTTTAGTCCTAGTTGCATTTATAATGACAGGAACTGTACTCCATAATATATATAATATAACACTTTTCCAATCTAACTCAAATTTCAGTATGCATCAATATTCCGTAGAGGGGAAGTGCATGCAATTCCTTCATCTATACAGGGTGCAGCATCTATGACTTCTACAGCTTCCCCTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAATGCCCTTGCCTTATGATGCAGAACCCAGGTTTTTCCGTTCACAGCGTGATGGATTAGTGTCAAGACGTGAAAAGGGTTCTAGTCATTTGAATGAAGAGTCAGAACCTTTGAGAAGTGATGTAGATGCTGACTCAGAATCTTTAAATTTGGCCAGTAAATGGAATGATACCAGTGAAGACGTATCAAAGGAATACCGTTCCAAGTCACCTGTAAGACTTTCTTCAGCAAAACTTACAACTGGGGCTGGGGTTGTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCGACTTGTCTTGAAGAGTACACGGAAGAGAATCCAAAGATTGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAACTGCCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTGATTGA 1877 0.3719 MTSTASPDNSLSDMYRSPPMPLPYDAEPRFFRSQRDGLVSRREKGSSHLNEESEPLRSDVDADSESLNLASKWNDTSEDVSKEYRSKSPVRLSSAKLTTGAGVVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETTD 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00576 165 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 162 - -
Pste5g00576 165 MobiDBLite consensus disorder prediction 29 61 - -
Pste5g00576 165 CDD RING-H2_AIRP1-like 110 158 - -
Pste5g00576 165 Pfam RING-H2 zinc finger domain 108 154 IPR024766 GO:0008270
Pste5g00576 165 MobiDBLite consensus disorder prediction 1 75 - -
Pste5g00576 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 161 IPR013083 -
Pste5g00576 165 FunFam E3 ubiquitin-protein ligase At3g02290-like 91 161 - -
Pste5g00576 165 SMART ring_2 114 154 IPR001841 -
Pste5g00576 165 ProSiteProfiles Zinc finger RING-type profile. 114 154 IPR001841 -
Pste5g00576 165 SUPERFAMILY RING/U-box 109 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00576 Pste-Chr5 3732648 3739596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00576 1 163 C3H Transcription Factor Family AT5G15790 60.119 7.43e-68 204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00576 5 3732648 3739596 Pste5g00576 5 3732648 3739596 ECH