Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00565 TAGAAACCCTAGTGTGACGAAGAGAGTTAAAACCCTTGGGTTCCGGTGTTGTATTCTGGTGTGGGTGGATGGAAGTTGTTTTGGCATCGTCGTCGTCCGGTGAGGGCGGAATAGGGTGCTGGGACCTTCACACCGGCGCGGAGCAGCTCCGCTACAAATCTTGCGCCTCCCCTTCTCACGGCCTCGTCGCCGTCGGTGCTCGCTTCCTCGCTTCCTCTTCCTCGCATCTTCGAGATTCTCTCGCAACCTCTTCCCTTCTCTTCTGGTCCTGGTCCAAGGTTGAAACCGGTAGGTTGCTTAAGAAGTGGCGTGCTCATTTTAGAGAGGTTACTTGCCTGGTTTTTTCTGAAGATGACTCGCTGCTGGTATCTGGTTCTGGAGATGGATCTGTCAGAGTTTGGTCTCTCTTCATGATATTTGATGATCTGAGAAGTCAGCAAGCAACTAATCTTTATGAGTATAGTTTTTCAGAGCACACCCTGAGTGTGACTGATGTTGTATGGAGCTTATCTAGGGGAACACTACTAAGAAATATAGTATTCCCTTCGGTAATTGATTCCATTGCATTGGATCCTGCCGAACATGTCTTTTATGCAGGCAGTAGAGATGGAAAGATATTTATTGCTGCACTTAACACTGAAAGCATTGTTACTCATAATTATGGGATCATTGATTCTTTTTCTAACCACAGCAAGAGTGTTACTTGTTTGGCATATGGCATGAGAGAGAATTTGTTAATATCTGGGTCAGAGGATGGAATGGTTCGTGTTTGGAATGCGAAAACTCGTAACATTGTTCGCATGTTTAAACATGCTAAAGGACCTGTAAATAATATTCTGGTTGTTAGAAGAGAAAATGACTCTAGTAATCACACATCTCCTATCATACAAGCATCATCAAAAAAGCAAGTGTCTAATCTACCCCCTCCATTGGAAAAATATGCAAATCCAAAAGATGAAGACTCAAATATGAAGACTATTATCAGCCTTGGGGGTGGCAGGAGATCTGTGGATCCTTTATACATCAGTTCTCATGTGATATCTAATTACATTAAGCAATTTCAGCATGAAGGTTCGGGTGCTGCGTCTGAAATGGAGATGGAAAAACTAAAACAGGATTACCAACTGTCAATGCAAATGGCTAATCAGTGGAAGAAAATGTATGAAAACTTGCATCAGTTTTGTGTAAAGGAGCTGTTGGATGGTGGTCAAACTAGAAACTTAGATTAAAATGACAATTATGACATTTTTTCTTGCCATTCACTTTTCAATTCTGTAGGTAGTATTGGCAGATCTCTGGCATCATCAGATTTTCTTCTGCGACTTTGCTATGCTTTTATGTTGCAATGTAAATTTTTTTGGCCCTCTCTGCGATGTCTCTTTAATCTTGTACTTAAAAAATTGCCTCCTTTTACTGAGAGTTTAAAAGAATGAATTATTCAGAGCTGACATTATTTGTAACTAGTTTTGGACATAGATTCAC 1482 0.4116 MEVVLASSSSGEGGIGCWDLHTGAEQLRYKSCASPSHGLVAVGARFLASSSSHLRDSLATSSLLFWSWSKVETGRLLKKWRAHFREVTCLVFSEDDSLLVSGSGDGSVRVWSLFMIFDDLRSQQATNLYEYSFSEHTLSVTDVVWSLSRGTLLRNIVFPSVIDSIALDPAEHVFYAGSRDGKIFIAALNTESIVTHNYGIIDSFSNHSKSVTCLAYGMRENLLISGSEDGMVRVWNAKTRNIVRMFKHAKGPVNNILVVRRENDSSNHTSPIIQASSKKQVSNLPPPLEKYANPKDEDSNMKTIISLGGGRRSVDPLYISSHVISNYIKQFQHEGSGAASEMEMEKLKQDYQLSMQMANQWKKMYENLHQFCVKELLDGGQTRNLD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00565 386 PRINTS G protein beta WD-40 repeat signature 6 20 IPR020472 -
Pste5g00565 386 PRINTS G protein beta WD-40 repeat signature 99 113 IPR020472 -
Pste5g00565 386 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Pste5g00565 386 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Pste5g00565 386 SUPERFAMILY WD40 repeat-like 8 255 IPR036322 GO:0005515
Pste5g00565 386 Pfam WD domain, G-beta repeat 202 236 IPR001680 GO:0005515
Pste5g00565 386 Pfam WD domain, G-beta repeat 75 112 IPR001680 GO:0005515
Pste5g00565 386 MobiDBLite consensus disorder prediction 266 283 - -
Pste5g00565 386 FunFam Protein ROOT INITIATION DEFECTIVE 3 158 271 - -
Pste5g00565 386 SMART WD40_4 126 187 IPR001680 GO:0005515
Pste5g00565 386 SMART WD40_4 73 112 IPR001680 GO:0005515
Pste5g00565 386 SMART WD40_4 197 236 IPR001680 GO:0005515
Pste5g00565 386 MobiDBLite consensus disorder prediction 266 296 - -
Pste5g00565 386 Gene3D - 153 284 IPR015943 GO:0005515
Pste5g00565 386 Gene3D - 3 152 IPR015943 GO:0005515
Pste5g00565 386 PANTHER WD-REPEAT PROTEIN 18 1 71 IPR045227 -
Pste5g00565 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 80 113 IPR001680 GO:0005515
Pste5g00565 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
Pste5g00565 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 239 - -
Pste5g00565 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 80 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00565 Pste-Chr5 3664910 3670297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00565 72 278 Eukaryotic Initiation Factors Gene Family AT2G46280 21.918 1.83e-06 47.0