Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00559 TAGGTTGTACACATTACACTTATATCTGAGAGACCACTTTCTTTCTCTCTGGATTTTCTCGGGAAAATTTTCCATCTCGAGAAAATAAATGGCTAGGTCTGCTGCGAAAGGCCATCGAGATGAATTGGAGGACGACGACGACGACGACGACGAAGGACTCTTAACTGCAAACACCTCTTCCTCTCTCAACAAAGTGAAGGTGGATGAACCTAGCACGGGGAAGAGGGTGAACCCGCATCGTTCGAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGATAAGGCATCCTTCTTGTTGGAGGTTATTGAATATATTCAGTTCCTACAGGAAAAATTACAAATTTATGAACAGACTTATGAAGGATGGAATCAGGAGCCAACGAAATTAACTCCATGGAGAAATCATCATGGATCTGCAGAAAATACTATAGATCCTTCTCAAGCTATACAAAATGGATCTGTTGATGAGAAAAATAACAATGTTTCTCCATTGTTGCCTAAAAATGTACAAAACCCGATAGAGTCTGACTTCTTAATGACAACTATTCAGAAAGGCCAAGCCCCTGGTTCAGCTGCAGAAGCAGTTCCTCTGACCATGCAAATGCGATTGGACATGTTTGATCCGGTTGTTAGCAGTGGTATGGCAACCCAACATCTGCAGGAATCTGTATCTAATGTAGACATGCCTTCCCATATCCAGCCTCAAGTGTGGCTTAATAAACCAAACAAGGGCAACTATATTCTTCCGCATAATGATACAATGAAGGGGCAGGAGGAGCTGGTGATTCAAAGTGGATCAGAGAGCATCTCAAGTGCCTATTCTCAGGGAATTTTAGATACTCTCACACATGCGCTGCAATCTTCGGGCGTAGATATGTCTCAGACTAATGTTTCAGTAGAAATTGATGTTGGTAGACGAGCAAATGCTGGGTTGATCCCCTCTGCATACAGTTCAAAGGGTCATGAAAACCAATTTGTGAGCAACCCAGCAATATCGCATTCCGGAGTTGATTACTGCAATATCGATTCTGAACAAAGTTCAAAGAGGCTCAGACAAGAAGCAAGCTAGATTCCCTCTCATTCATTTTGTCAGGAATTTCCTTTCTTTTATTTGTCTTAAGATGAGAGTAAGAGGGATTGGGTGGATCGGTTCATTTTTGCCATGCTGGTTAGAGCCAGACAAAATGTATATTTCACCATTCTGGTTTTGGGACAAGAGATTCTGAAATAAAATGTGATATATGCTTGTGCTTGCTTCTACTTCAATTTTCCATTTTAATGCGTTTGAGTCTGCTTGATTGTGGCATATTTATTCATAATCTTGCCATTTCTTTAATGGACTACTTTTGGTAGCAATCCTGGTTCTTGGAG 1431 0.4095 MARSAAKGHRDELEDDDDDDDEGLLTANTSSSLNKVKVDEPSTGKRVNPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQTYEGWNQEPTKLTPWRNHHGSAENTIDPSQAIQNGSVDEKNNNVSPLLPKNVQNPIESDFLMTTIQKGQAPGSAAEAVPLTMQMRLDMFDPVVSSGMATQHLQESVSNVDMPSHIQPQVWLNKPNKGNYILPHNDTMKGQEELVIQSGSESISSAYSQGILDTLTHALQSSGVDMSQTNVSVEIDVGRRANAGLIPSAYSSKGHENQFVSNPAISHSGVDYCNIDSEQSSKRLRQEAS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00559 346 FunFam BHLH domain class transcription factor 47 119 - -
Pste5g00559 346 MobiDBLite consensus disorder prediction 39 65 - -
Pste5g00559 346 MobiDBLite consensus disorder prediction 1 65 - -
Pste5g00559 346 SMART finulus 55 105 IPR011598 GO:0046983
Pste5g00559 346 Coils Coil 96 116 - -
Pste5g00559 346 CDD bHLH_AtBIM_like 51 124 - -
Pste5g00559 346 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Pste5g00559 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Pste5g00559 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 128 IPR036638 GO:0046983
Pste5g00559 346 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 343 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pste5g00559 346 MobiDBLite consensus disorder prediction 120 154 - -
Pste5g00559 346 Gene3D - 48 121 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00559 Pste-Chr5 3610434 3616368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00559 51 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 42.751 5.26e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g00559 HLH 1.7e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00559 5 3610434 3616368 Pste5g00559 5 3610434 3616368 ECH