LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00549	GTGGCGTTGGGCACAGAAACATCGAGAAAAGACGAGACAGTCTGATGCACAAAGATTCCGTAGGTACCGCCACGTCTGTTTTCTCTCTTTCCAATTTCCATTTCCTCGATAAGAAGAAGCCCCCCACCGATCAAGGCATCTTTACCTTAAACGACAATGGCCGATGGCGATGATATTCAACCCCTGGTCTGCGACAATGGAACCGGAATGGTGAAGGCTGGTTTTGCTGGAGACGATGCCCCAAGGGCGGTGTTCCCTAGCATTGTTGGGCGTCCTCGTCACACGGGTGTGATGGTTGGAATGGGCCAGAAGGATGCGTATGTTGGAGACGAGGCTCAATCAAAGAGAGGTATTTTGACACTGAAATACCCAATTGAGCATGGTATTGTTAGCAATTGGGACGATATGGAGAAGATCTGGCATCACACTTTCTACAACGAGCTTCGTGTGGCCCCTGAGGAACACCCTGTTCTTCTCACCGAGGCTCCCCTTAATCCCAAGGCCAATCGTGAGAAAATGACTCAGATCATGTTTGAGACCTTCAACACTCCTGCTATGTACGTCGCCATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGCCGTACTACTGGTATTGTTCTGGACTCTGGGGACGGTGTGAGTCACACCGTTCCTATCTATGAAGGCTATGCTCTCCCACATGCAATCCTGCGTTTGGACCTTGCAGGGCGTGATCTCACTGATGCCCTCATGAAAATCTTGACTGAGCGTGGCTACACTTTCACCACTTCTGCGGAGCGTGAAATTGTGCGGGACATGAAGGAGAAACTCGCCTACATTGCTCTTGATTATGAGCAGGAGTCGGAAACTTCAAAGACCAGCTCCTCTGTTGAGAAGACCTACGAGCTTCCTGATGGCCAGGTCATCACAATCGGTGCCGAGCGATTCCGCTGCCCTGAAGTCCTTTTCCAGCCTTCCATGATTGGGATGGAATCTCCTGGCATCCATGAGACCACATATAACTCTATCATGAAGTGTGATGTCGACATCAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTTCCACCATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAGATCACCGCATTGGCCCCAAGTAGCATGAAAATCAAGGTTGTCGCACCACCCGAGAGGAAATACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCCCTCAGCACCTTCCAACAGATGTGGATTGCGAAGGCAGAGTATGATGAATCTGGACCATCAATCGTTCACAGGAAATGCTTCTAAGTTTTAATGTTGATGGAGTATGAAAGCTGGACCAGGGAAATTACTATATATATATGATTACTACAAAAATACCATCAAGTGGTTGAGGAACTTCTATTTCCTACTATTTAGCATTCCTTTTAACATGTTTTTGTGTTTCCCTTTCTTTGATATCTTGAGATCAGAGTATGGAGGCTAGCAAGATATGTAAGATTCAATTTTTCCCCGTTTTGTGGTAGAAGAGATGTGCATTGTTACCTATTTGGTTTGGTTGAATCAACAAACTCTTTTCATAAAGTATTCTTACTAACATAGTGCTATGCTTCATTATAATTATCTGAAACAAAAGAAGGAACGACTTTCTCTTCACGAATA	1644	0.4629	MADGDDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQESETSKTSSSVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF	377

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00549	377	Gene3D	-	10	371	-	-
	Pste5g00549	377	SMART	actin_3	7	377	IPR004000	-
	Pste5g00549	377	Gene3D	Actin; Chain A, domain 4	182	273	-	-
	Pste5g00549	377	Gene3D	-	140	340	-	-
	Pste5g00549	377	SUPERFAMILY	Actin-like ATPase domain	149	377	IPR043129	-
	Pste5g00549	377	ProSitePatterns	Actins and actin-related proteins signature.	106	118	IPR020902	-
	Pste5g00549	377	FunFam	Putative actin-related protein 5	341	369	-	-
	Pste5g00549	377	FunFam	Actin, alpha skeletal muscle	3	178	-	-
	Pste5g00549	377	Pfam	Actin	5	377	IPR004000	-
	Pste5g00549	377	FunFam	Major actin	260	340	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00549	Pste-Chr5	3556113	3558017	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00549	1	377	Cytoskeleton Gene Families	AT5G09810	96.021	0.0	763

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g00549	5	3556113	3558017	Pste5g00549	5	3556113	3558017	ECH
	Pste5g00549	5	3556113	3558017	Pste4g02893	4	20431101	20434817	PCT

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