Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00541 ATGATAAATTCACTTTGTGGAAGCCTCAAGAGTGAGAACACCTCTAGAACCAAACACCAATCCACTTCTTCAAATGATTCAATTTTGCAGTCTAAGAAAAATGCCACTCAATCATCTACTGATCTAGATACTAGTCTAACCCCACCAAGCTTAAACCTTCCATCACTCAAATTTGAGCTGGATGGAGATGTGGAAGTTCAGTCACCAGATAGTACAATGTGGGAGTCATTTTTTGCTGACCAATTAGATGCTGATTTCATGATCTCATCCCCAGTGAGGAATGCTCCTTCCCCACAAACCTCTTCCTATAATTCCCACTATAACTATGCTCAGGGAATGCAAGGCCAGAGTCTCACAGGGTGTTCTCCACCCCGGCTCTCATCATCCCAAATTGGAGCCTTTAACAGCTGCCACAAAGGAAAAGGACTCAGCCCTCTCCACAGGGTGTTCAACTCACCAAACAACCAGTACATGCAGCATGTTGAAAACCTTTCACTGCCAGCAATAGAAGAGTTCTTGGAGGACTATCAGGGTTATTCATCAACCAAGGTGTCTTCTGATATTGCAAGTTCTTCAGATTGCTTTGACTTGTCAACTCAAATGCCATCATCCATGTTGGATAGCTATACAGTGCCCAATTCCTCAAGGTACCATGGATCGGTTGATGAAGAATCCTCAGTGCACGGTGGTGGTGGCTCTTCTCAACTGTCCCAAGAAAGTGACATCTATCACCGGATGGGGTCCATGGCCAGTGCATCCTTGTCACAGGCTCTACAACAAGAACGCTACCATGAGAAACAGCAAAAGCAGCAAGCACAACAACTGCAGCACCAGCAAGAGAATTTGATTGTGCCTATTCCAATAGGAATCGACCAGGAGCAAGACAGCGGGCTTCAACTGGTGCACCTGTTACTGGCATGCGCGGAGGCGGTGGCGAAAGAGGAATACATGGTGGCAAGAAGGTACCTCCACCACCTGAACCGCGTGGTGACACCCTTAGGCGACTCCATGCAGAGGGTGGCGGCGTGCTTCACGGAGTCGCTCAGCGCGAGACTCAACTCCACTCTGACGGCCCCCTCAGATTCCTTGGAAGTGTTGAAAGTGTACCAGATCGTGTACCAGGCCTGCCCCTACGTGAAGTTCGCCCACTTCACCGCCAACCAGGCCATCTTCGAAGCCTTCGACTCCGAAGACCGCGTCCACGTCATCGACCTCGACATCCTCCAGGGCTACCAGTGGCCCGCCTTCATGCAGGCCCTGGCTGCCCGCCCCTCGGGCCCCCCCTTCCTCCGCATCACGGGCCTCGGCCCTTCCCTCGACCACGTCCGCGAAACCGGCCGCTGCCTCACCCACCTCGCCCACTCCCTCCGCATCCCCTTCGAATTCCACCCCCTCGCCCACCCCCTCCACGACCTCTCCCTCCATGCTCCACCGCCGCGTCGGCAGGCCCTCGCCGTCAACGCCGTGAACCGCCTCCACCGGCTCCCCTCCCACCACCTCGGCCCCCTCCTCTCCATGATCCGCGACCAGGCCCCCAACATCGTAACCCTAGTCGAGCAAGAGGCCAGCCACAACGGGCCTTACTTCCTGGGCCGCTTCCTCGAGGCCCTGCACTACTACTCCGCCATCTTCGACTCCCTCGACGCCACCTTCCCCCCGGATTCCGCCCAGCGCGCCAAGGTGGAGCAGTACATATTCGGCCGGAGATTCGGAACATTGTGGCCTGCGAGGGCGCGGAGAGGTTCGAGCGGCACGAGAGGTTGGACAAGTGGCGCAAGATCATGGAGGGCAAGGGCTTTAAGGGGGTTGACCGAGGATAAAGGCTGCTTGCTTCTTGGCTGGCAGGATAGGGCCATTGTTGCTGCCTCTGCATGGCGCTGTTGA 1884 0.5531 MINSLCGSLKSENTSRTKHQSTSSNDSILQSKKNATQSSTDLDTSLTPPSLNLPSLKFELDGDVEVQSPDSTMWESFFADQLDADFMISSPVRNAPSPQTSSYNSHYNYAQGMQGQSLTGCSPPRLSSSQIGAFNSCHKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGYSSTKVSSDIASSSDCFDLSTQMPSSMLDSYTVPNSSRYHGSVDEESSVHGGGGSSQLSQESDIYHRMGSMASASLSQALQQERYHEKQQKQQAQQLQHQQENLIVPIPIGIDQEQDSGLQLVHLLLACAEAVAKEEYMVARRYLHHLNRVVTPLGDSMQRVAACFTESLSARLNSTLTAPSDSLEVLKVYQIVYQACPYVKFAHFTANQAIFEAFDSEDRVHVIDLDILQGYQWPAFMQALAARPSGPPFLRITGLGPSLDHVRETGRCLTHLAHSLRIPFEFHPLAHPLHDLSLHAPPPRRQALAVNAVNRLHRLPSHHLGPLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFGRRFGTLWPARARRGSSGTRGWTSGARSWRARALRGLTEDKGCLLLGWQDRAIVAASAWRC 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00541 627 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 249 599 IPR005202 -
Pste5g00541 627 MobiDBLite consensus disorder prediction 206 237 - -
Pste5g00541 627 ProSiteProfiles GRAS family profile. 291 627 IPR005202 -
Pste5g00541 627 MobiDBLite consensus disorder prediction 1 52 - -
Pste5g00541 627 MobiDBLite consensus disorder prediction 206 220 - -
Pste5g00541 627 Pfam GRAS domain family 300 569 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00541 Pste-Chr5 3541349 3545319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00541 294 627 GRAS Transcription Factor Family AT1G66350 39.678 6.69e-77 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pste5g00541 GRAS 8.9e-89 CL0063