Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00540 CCGAACCTCTTCGGTCGAATCTCGAAAGAAACAAACAGGAGCGAGGGAAGTGTTCCCGCCATGGGAATGGAGCGAGTGCAGTGTGGCTATGCCTCTCTGGACGAAACGTTCGAAATTGGGAAAGAGATGTATCAGGGTCAGCAATACAGCCAGATTTACTTCGCACGCCTTCATTTGATGCGAACTTTCTTGTATTCCCTTGTTCCTCACTGGAAACCCAATTTTCCCGTGTGCACGGTGCTGCAATTGGAAGAGGGCAAAGAGTGTGTCATTGTTGGAACCCTTTATAAACACATGAAGCTCAAACCTTGTATACTTGATGAGTATTCTAAGCAGAGATCAGTGGTTCCACTCGTCAAGCCACATAACTTCATGCACCCAGATGATCACTTAGTTTTGGAAGATGAGAGTGGACGGGTTAAGCTCGGTGGGAGTATAATTTTGCCATCTGAATATGTAACAGGAATTGTGGTTGCTTTACTTGGAAAAGAATCGGGGGCAGGTGACTTTTTGGTTCTGGATGTCCTAGATGCAGGCTTACCACCACAGATACAATTTCCCCTTAAATCAAGGCAAGACAAATATGTTGTTCTGGTGTCAGGTTTAAGTGTTGGGAGCAGCAGCTCTAATCCTCTTCAGTTTCAGCTTCTCATCGATCATATTACTGGGCATTTAGGGGATGAGAAGGAGCAAAGTATTGCATCACAAATAGTTCGAGTTGTCTTTGCTGGAAATTTAGTTGAGATACCTCGCAGATTTCTTAATGGACAGAATTTGGCTTCAAAGGACCTGTCAAGGATGGCTGAGCCAGTAAAGGAGCTAGATATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATCATGCCAGGACCCAGTGACCCTGCTAATTTCTCATTACCACAGCAGTCATTGCATAGATGCCTTTTCCCTGGGTCATCGGCATATAATACTTTTCGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAGTGTCAGGTTTCTTGGGACATCAGGCCAAAATGTAGATGATCTTGAGAAGTATTCAGAGGCAAAAGATAAACTTGAATTCCTAGAAAGGACATTAAGATGGAGGCATTTGGCGCCAACTGCACCTAATACTCTTGGATGCTATCCTTATACTGATAGAGATCCTTTCTTCATTGAGAGATGTCCTCATGTTTACTTTGCTGGAAATCAAGATAAATTTGAAACTCGTGTCATAAAGGGATCGGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGGTTATGCGATATTGATTATTGTGCTGCCATTAGCGTGTCCTTGGAGATAAAGCGAAGAACTGAAAATTGAAGTTTAAAGTTGATGGCTACCTGCGTTCTTTAGTGTAATATATTTTTGTATTATGCTTAATATATTGAATTCCCATGTTTATTCTTATAGGTTTCAATGTAACATAATATTTACACTTGTGCATTTTGTTTGACCGTAAATTGTTCGAACATTTCAATTTTGAAATAGTCAAGGTCTTCCCCTTCAGAACACCGTATATGTTTTTTTTTTTAATAAATGGTCTGCAAGATCAGATTAGCAATATGTAGGAACTCATTATTT 1633 0.4078 PNLFGRISKETNRSEGSVPAMGMERVQCGYASLDETFEIGKEMYQGQQYSQIYFARLHLMRTFLYSLVPHWKPNFPVCTVLQLEEGKECVIVGTLYKHMKLKPCILDEYSKQRSVVPLVKPHNFMHPDDHLVLEDESGRVKLGGSIILPSEYVTGIVVALLGKESGAGDFLVLDVLDAGLPPQIQFPLKSRQDKYVVLVSGLSVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIVRVVFAGNLVEIPRRFLNGQNLASKDLSRMAEPVKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSAYNTFRSCTNPHCFELDSVRFLGTSGQNVDDLEKYSEAKDKLEFLERTLRWRHLAPTAPNTLGCYPYTDRDPFFIERCPHVYFAGNQDKFETRVIKGSEGQLVRLICVPKFSETGVAVMVMRY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00540 438 Gene3D - 186 437 - -
Pste5g00540 438 Gene3D - 54 178 - -
Pste5g00540 438 FunFam DNA polymerase delta small subunit 181 437 - -
Pste5g00540 438 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 20 435 IPR024826 -
Pste5g00540 438 Pfam DNA polymerase alpha/epsilon subunit B 196 406 IPR007185 GO:0003677|GO:0006260
Pste5g00540 438 Pfam DNA polymerase delta subunit OB-fold domain 48 175 IPR040663 -
Pste5g00540 438 FunFam DNA polymerase delta subunit 2 54 178 - -
Pste5g00540 438 CDD MPP_PolD2_C 210 435 IPR041863 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00540 24 435 Core DNA Replication Machinery Family AT2G42120 75.971 0.0 677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00540 5 3534964 3542198 Pste5g00540 5 3534964 3542198 ECH