Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00526 TTATTACTCTCTACTCTAGTCGCAACCTTCTCTTCGCTTCGCCCTTGTTGCTCTAAAACCCCTCCTTCAGGTTCACCACTGCTAGGGTTAGGGTTTCTCCATCCTCTTTCACTGTCCCATCGCTTCAATTCTAAGCCTAGGTTTTCCTCTGCAATATCCTCTACTTAAAACTCGCTCTTTCTTCCGGATCTAGATCTATGGATACTCGCAAGAGGGGAAGATTCGAACCTGGCTTCAGCTTAAATGGCGGATTCAAGAAATCTAAGCAAGAAATGGAGTCCTTGTCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGTTGCCCATATGATGAATCTAGCACCTGCAGCACCTCCAGCATCTAGAAATGTTGCGGCCCTGCCACCTGTACCTAATGGGTCCACACTTGCCTCTGTTAAAACTCGCATTTGCAACAAATTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGTCATTTTGCTCATGGTGAATGGGAACTTGGCAAGCAAATTGCCCCATCATTTGATGATCATAGGGCAATGGGACACACTGCAGCAGGTCGTCTTGCTGGTCGAATGGAGCCCCCTCCTGGTCCTGCCACAAGTTTCGGTGCCAATGCAACAGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCAATCATCGGTAAGGGTGGTGTAAACTCAAAACAGATATGCCGTCAAACTGGAGCCAAGCTCTCTATTCGAGAGCATGAATCTGACCCAAGCCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATCAAGGAAGCAAGTAACATGGTAAAGGATTTACTGTTGACGCTGCAAATGTCTGCACCACAAAAAACAACCCCAGGTGTTCCTGGTGCTCCTGCTCCTCCTGGAAGCAACTTTAAGACAAAGTTGTGTGAAAATTTTGCAAAAGGATCTTGCACGTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGTAAATGAGGAGTATAAACTTTTGTCAGTGTGGTGCATTTAGCCAGAATTATTAAATATTGTTGTGCATTGCTACTTTAGCAGTACTGACAGGACTTTCGATGATAGTTTCATTGTTGAGTTGTTTTATTTGACTGTTTTTGAGTTGCAACTTTTGCTTATATCGTGATTCTTAAACTTGTGTTCTCTTTAGTTTACCCATTAAGTTGCAAGTCATCGTCTCAACATGTACCAATCATGGTTTTTGTCCTTCTTAATTTTATTTAGTAAAAGCCAATAGTGTTTAAAATTTAACCTATTTCAAACTAAGA 1378 0.4296 MDTRKRGRFEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLAPAAPPASRNVAALPPVPNGSTLASVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKQIAPSFDDHRAMGHTAAGRLAGRMEPPPGPATSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPSLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPQKTTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00526 292 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Pste5g00526 292 MobiDBLite consensus disorder prediction 1 20 - -
Pste5g00526 292 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 160 IPR045877 GO:0003729
Pste5g00526 292 SUPERFAMILY CCCH zinc finger 99 130 IPR036855 GO:0046872
Pste5g00526 292 Gene3D - 95 131 - -
Pste5g00526 292 Gene3D - 260 292 - -
Pste5g00526 292 SUPERFAMILY CCCH zinc finger 261 291 IPR036855 GO:0046872
Pste5g00526 292 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Pste5g00526 292 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Pste5g00526 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Pste5g00526 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Pste5g00526 292 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Pste5g00526 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
Pste5g00526 292 FunFam Zinc finger CCCH domain-containing protein 256 292 - -
Pste5g00526 292 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Pste5g00526 292 SMART kh_6 167 237 IPR004087 GO:0003676
Pste5g00526 292 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Pste5g00526 292 Pfam KH domain 171 233 IPR004088 GO:0003723
Pste5g00526 292 FunFam Zinc finger CCCH domain-containing protein 95 131 - -
Pste5g00526 292 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Pste5g00526 292 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Pste5g00526 292 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pste5g00526 292 CDD KH-I_AtC3H36_like 171 236 - -
Pste5g00526 292 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00526 Pste-Chr5 3456011 3459662 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste5g00526 KH_1 8.9e-12 CL0007