LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00507	AGCAACCAAAACTGCAAAACAGTAGCAAAGTCCCGGAATGTTGGAGGGAGAAGGCAGGGGGACGTGCGACACATGCGGGTCGGGCCCCTCGACGGTGTTCTGCCGCAGCCACAGAGCCATGATGTGCGGCACGTGCGACGCGCGGCTCCACGCCTCGGCGTCCTGGCACGAGCGGGTATGGGTGTGCGAGGCGTGCGAGCGAGCCCCGGCGGCCTTCCTCTGCAAGGCGGACGCGGCATCCCTATGCTCCTCCTGCGACGCCGACATCCACTCCGCCAACCCCCTGGCCAGCCGCCACCACCGCGTCCCCATTCTCCCCATCGCCCCCGATGACGACGATGTGGATGACATTGACGATGACGAAACCGCTTCATGGCTCTTGCTCAACCCCGTCAAAATACCCTCTAACAATAACGCCTTCTCCTATGCTGCTGAAGTTGACGAGTACTTGGACCTTGTTCATGACTGTAATAACCACTTTCCTGCTCCTGCTTCTGCTTCTGCTTCTGCTTCCACTCCTACTCATCATTACGCTCCTGCTCCCGTTCCCGTTCCCGTTCCCGTTCCCCCCAAGCCTTATGCTGGGGACAGTGTTGTTCCGGTTCAGCTCCACCATCATTTTCAGCTTGCCTTCCACTATGACAACTCCAACTCCAAACCTCCCATCACTTACAACGCTTCTGTTTCAGTTTCGTCAATGGATGTTGGTGTCGTGCCTGACTCAACAATGAGGGATGTCTCAATTGGCCATTCAAGACCCCCCAAAGGGACAATTGACTTATTTTCTGGGCCTCCCATTCAGATGCCTTCCCATCTTACTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTATAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCTTATGCAGAGACTAGACCCCGCATTAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCTCAACACTAATTACAGAAGTTGGATACGGGATTGTTCCTTCTTTCTGAATATGCTGTGTGGAAAAAATTGCCAGAAGACACAGAAGAAGAGGATCATGATCAATAGAAATGGCAATCACTTAAGTACCAAGTTATTTTGCTGATACTGTATTTTTTATGTAATCTAATTAGTCGCAGTTGCACTAATCGGACGCTTTATTATTTTGTTTGTTGTCTTTTCTATGTAACTTCTATTTGTAAATACAGTCCTTGTATTAAATTATTAAATTACAGTCAAAATATCTTTGAAAAAATTTC	1291	0.4919	MLEGEGRGTCDTCGSGPSTVFCRSHRAMMCGTCDARLHASASWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAPDDDDVDDIDDDETASWLLLNPVKIPSNNNAFSYAAEVDEYLDLVHDCNNHFPAPASASASASTPTHHYAPAPVPVPVPVPPKPYAGDSVVPVQLHHHFQLAFHYDNSNSKPPITYNASVSVSSMDVGVVPDSTMRDVSIGHSRPPKGTIDLFSGPPIQMPSHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSSTLITEVGYGIVPSF	334

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pste5g00507	334	ProSiteProfiles	CCT domain profile.	265	307	IPR010402	GO:0005515
Pste5g00507	334	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 4	10	321	IPR045281	GO:0009909
Pste5g00507	334	ProSiteProfiles	Zinc finger B-box type profile.	45	92	IPR000315	GO:0008270
Pste5g00507	334	Pfam	B-box zinc finger	47	92	IPR000315	GO:0008270
Pste5g00507	334	CDD	Bbox1_BBX-like	49	92	-	-
Pste5g00507	334	ProSiteProfiles	Zinc finger B-box type profile.	5	49	IPR000315	GO:0008270
Pste5g00507	334	SMART	bboxneu5	45	92	IPR000315	GO:0008270
Pste5g00507	334	SMART	bboxneu5	5	41	IPR000315	GO:0008270
Pste5g00507	334	Pfam	CCT motif	265	307	IPR010402	GO:0005515

Showing 1 to 9 of 9 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00507	Pste-Chr5	3324802	3327011	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00507	10	334	C2C2-CO-like Transcription Factor Family	AT3G02380	52.113	4.20e-112	328

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-CO-like	Pste5g00507		zf-B_box	3.6e-07	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste9g00340	9	1615961	1618738	Pste5g00507	5	3324802	3327011	PCT

Showing 1 to 1 of 1 entries

Previous1Next