Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00507 AGCAACCAAAACTGCAAAACAGTAGCAAAGTCCCGGAATGTTGGAGGGAGAAGGCAGGGGGACGTGCGACACATGCGGGTCGGGCCCCTCGACGGTGTTCTGCCGCAGCCACAGAGCCATGATGTGCGGCACGTGCGACGCGCGGCTCCACGCCTCGGCGTCCTGGCACGAGCGGGTATGGGTGTGCGAGGCGTGCGAGCGAGCCCCGGCGGCCTTCCTCTGCAAGGCGGACGCGGCATCCCTATGCTCCTCCTGCGACGCCGACATCCACTCCGCCAACCCCCTGGCCAGCCGCCACCACCGCGTCCCCATTCTCCCCATCGCCCCCGATGACGACGATGTGGATGACATTGACGATGACGAAACCGCTTCATGGCTCTTGCTCAACCCCGTCAAAATACCCTCTAACAATAACGCCTTCTCCTATGCTGCTGAAGTTGACGAGTACTTGGACCTTGTTCATGACTGTAATAACCACTTTCCTGCTCCTGCTTCTGCTTCTGCTTCTGCTTCCACTCCTACTCATCATTACGCTCCTGCTCCCGTTCCCGTTCCCGTTCCCGTTCCCCCCAAGCCTTATGCTGGGGACAGTGTTGTTCCGGTTCAGCTCCACCATCATTTTCAGCTTGCCTTCCACTATGACAACTCCAACTCCAAACCTCCCATCACTTACAACGCTTCTGTTTCAGTTTCGTCAATGGATGTTGGTGTCGTGCCTGACTCAACAATGAGGGATGTCTCAATTGGCCATTCAAGACCCCCCAAAGGGACAATTGACTTATTTTCTGGGCCTCCCATTCAGATGCCTTCCCATCTTACTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTATAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCTTATGCAGAGACTAGACCCCGCATTAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCTCAACACTAATTACAGAAGTTGGATACGGGATTGTTCCTTCTTTCTGAATATGCTGTGTGGAAAAAATTGCCAGAAGACACAGAAGAAGAGGATCATGATCAATAGAAATGGCAATCACTTAAGTACCAAGTTATTTTGCTGATACTGTATTTTTTATGTAATCTAATTAGTCGCAGTTGCACTAATCGGACGCTTTATTATTTTGTTTGTTGTCTTTTCTATGTAACTTCTATTTGTAAATACAGTCCTTGTATTAAATTATTAAATTACAGTCAAAATATCTTTGAAAAAATTTC 1291 0.4919 MLEGEGRGTCDTCGSGPSTVFCRSHRAMMCGTCDARLHASASWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAPDDDDVDDIDDDETASWLLLNPVKIPSNNNAFSYAAEVDEYLDLVHDCNNHFPAPASASASASTPTHHYAPAPVPVPVPVPPKPYAGDSVVPVQLHHHFQLAFHYDNSNSKPPITYNASVSVSSMDVGVVPDSTMRDVSIGHSRPPKGTIDLFSGPPIQMPSHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSSTLITEVGYGIVPSF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00507 334 ProSiteProfiles CCT domain profile. 265 307 IPR010402 GO:0005515
Pste5g00507 334 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 10 321 IPR045281 GO:0009909
Pste5g00507 334 ProSiteProfiles Zinc finger B-box type profile. 45 92 IPR000315 GO:0008270
Pste5g00507 334 Pfam B-box zinc finger 47 92 IPR000315 GO:0008270
Pste5g00507 334 CDD Bbox1_BBX-like 49 92 - -
Pste5g00507 334 ProSiteProfiles Zinc finger B-box type profile. 5 49 IPR000315 GO:0008270
Pste5g00507 334 SMART bboxneu5 45 92 IPR000315 GO:0008270
Pste5g00507 334 SMART bboxneu5 5 41 IPR000315 GO:0008270
Pste5g00507 334 Pfam CCT motif 265 307 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00507 Pste-Chr5 3324802 3327011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00507 10 334 C2C2-CO-like Transcription Factor Family AT3G02380 52.113 4.20e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste5g00507 zf-B_box 3.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00340 9 1615961 1618738 Pste5g00507 5 3324802 3327011 PCT