Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00501 TATAATTACCTTTCCTATCCTCTTCTTCCCCTCCCCATTCCATTTGGTGTTCCTTAATAAGGTTGAGCTTCCAAAGAGTTATGGTGTAGGCCACCTCACAATTTTTAACACATATGTATTAGTCTGCTTACCATCTAACTTCAAATTTTGTGTCAATGAACGAGAACAAGATTGATTGGAGAGGATTGATTCAACAAAGTCATGGACTAAATGGGGACTTTAATTCTGAGTTTGGCAATCGTTATTGTCAATATTTTGATATCAGAATGCCTTGGAACATGACACCACCACTTGCCATGGTTAGAGGAGGAGAAGAACAGTTACCAAACACGGGCCCTGCCAAATCATTTGGCACCATTATGAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGGGTTTGCAGAATATGATTGCCAAGTTGGTAGTCAATCTCAGTTAAGTAAGATTAATGATTTGGAGTTCCCTTTGTATCAATCTCCTAGGGGAAACCTTTTCTTGGATTCAGCAAACCAACCTGACCCCAACTTTGATTTGTCCAAGTCTACTTTGCAATCCATAATGAAATCTCAATTGAATAGTAATCAATGTCGTAGATCTCCTGAGAAGTCCAATAATAACTCATGTGACAATTTTCCCAGTTCCAAGCTCCTTCCAATTGAACAACAGAAGTTTTTCATTGATGGTCTTATCAGGGGATCATCATTTCCTAACAAAGAAAATCCAGACCATATGGTTGCTCGTGGATCTTATAATTTTCCTGTTGCAGAGCTGAGATTCTCTTCTCAGATTGAAAAGTTGTCCCCAACACACTTAGCAGGAAGCATTTCCACTATTGGAAACTCCTCTTCTAATGGGGTCACAGCAGTATCAAGTAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAATTTGTTGAGTGCGTGAATCGCCTTGGAGGTGCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGGACACAGATGGTTTGACTATCTACCATGTCAAAAGTCATTTGCAGAAGTATAGAATTGCAAAATTCATTCCGGAGCCCTCTCATGGGAAATCTGATAAAAGAGCCCAAACAAAGGATGTGCATCATCTAGACATTAAAACTGGCTTACAAATTAGAGAGACACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCATGAACAATTAGAGATTCAGAGAAAACTACAGTTGCGAATAGAAGAACAAGGCAGGGAACTGAAAAAAATGTTTGACCAGCAGCAAAAGGCAAGTAATAACCTCTTGAATACTCAGAATTCAGGCACTGATGAGACAACAATTAGCCATAAAGATAGTGAGATTTGTGTTTCTGAAGGGGTTAAAAATTCCTTCTTCCCTTCTAAGACCTCTCCAAGCCCATAATTTGATGGTTACGTATAAAATTACAGTTTTCCAAAAGCTTACTCTTTGTAAGAAACAGATAGACCACATCATGTGATTTTGTTATGGGAAGAATAACATTGTTGTTTATCGTACACAGGCAAACTCTATGAATTAGTACTAAATTAAGAATGCTTACATTTACATACCC 1590 0.3843 MNENKIDWRGLIQQSHGLNGDFNSEFGNRYCQYFDIRMPWNMTPPLAMVRGGEEQLPNTGPAKSFGTIMSRFESPASAFYAAENCMGFAEYDCQVGSQSQLSKINDLEFPLYQSPRGNLFLDSANQPDPNFDLSKSTLQSIMKSQLNSNQCRRSPEKSNNNSCDNFPSSKLLPIEQQKFFIDGLIRGSSFPNKENPDHMVARGSYNFPVAELRFSSQIEKLSPTHLAGSISTIGNSSSNGVTAVSSKTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMDTDGLTIYHVKSHLQKYRIAKFIPEPSHGKSDKRAQTKDVHHLDIKTGLQIRETLKLQLDAQRCLHEQLEIQRKLQLRIEEQGRELKKMFDQQQKASNNLLNTQNSGTDETTISHKDSEICVSEGVKNSFFPSKTSPSP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00501 421 FunFam Myb family transcription factor 246 304 - -
Pste5g00501 421 MobiDBLite consensus disorder prediction 379 393 - -
Pste5g00501 421 NCBIfam myb-like DNA-binding domain, SHAQKYF class 247 302 IPR006447 GO:0003677
Pste5g00501 421 Coils Coil 334 354 - -
Pste5g00501 421 Gene3D - 246 305 - -
Pste5g00501 421 Pfam Myb-like DNA-binding domain 251 300 IPR001005 -
Pste5g00501 421 Pfam MYB-CC type transfactor, LHEQLE motif 331 378 IPR025756 -
Pste5g00501 421 MobiDBLite consensus disorder prediction 379 400 - -
Pste5g00501 421 MobiDBLite consensus disorder prediction 146 167 - -
Pste5g00501 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 231 392 IPR044848 GO:0003700
Pste5g00501 421 SUPERFAMILY Homeodomain-like 245 301 IPR009057 -
Pste5g00501 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 304 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00501 Pste-Chr5 3267744 3270695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00501 230 400 G2-like Transcription Factor Family AT4G28610 52.601 5.80e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pste5g00501 Myb_DNA-binding 9.1e-08 CL0123