Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00495 GCCCAGGCTGTTTGCATTAGAGAAACCCCAATTCTAAACCTAACGCATTGGGGGATACGAGGTAGTTGAGTCGAATTCGAAGGTGAAGGATCAAGCGGAAGTTGGTGTGTGAATAGTGAATACAAAGAGGATAAGACTATGGAGGATTTGAAGAAGAGAAAGCTTGACAAAATAGCCAACGATGATTTTACTTCCAAGGAAGAGCTTCGCTTCCTCGTTGAACCTCTCGCTAAACCCCAACTCGTTGACCTTCTTGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTCAAGAACATGGAGAAATTGAGGAAGGAGCTGTGATATACGATAAAGTGACAGGAAAATCTCGTGGCTATGGATTTATCACTTACAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCCCCTAGCAAGTTAATTGATGGGAGATTAGCTGTGTGTAATCTAGCTTGTGAGGGCCTAAGTGGAACAAGTAGTGCTCCTGATCTTACCTTGAGGAAGCTTTATATTGGAAGCTTATCACCGGAAGTCACAAGTGAAATGCTGCTTAACTATTTTGCCAGACATGGTGAAATAGAGGAAGGTTCGGTTGCATATGACAGGGATACAAATGAATCCCGTGGCTTTGGCTTTGTCACGTACAAGACAGCAGAGGCTGCAAAGAAGGCCGTAGATGACCTAGAAAAGACTCTTGGGGGAAGAAATATAGTCGTAAAATATGCTGATTCACACAAAGGTAAAACTGGCCAGCCGCCATTTTCTGCTGGAGTGGTTCCAATGGCAGGGGCCTTATCTATGACCCCAGGATATATGCAGCCAGGCAAAGCTCATGTTAGTTCAGGCCCACCAACCAATTACAGTTACCCCCAATCTGTAGCACCATACTCTGCTTCTCCTTATCCAAACCCTCCCGCTGCACCCTCTCCATATCCAACACAAGGGCAGATTCCCTATCCTCCAGTTTCTGCAAAGAAAGATCAACATGGGTTTCCACCTACTCAACCTGTAGGAATGAACAATTACCCTTATTACTATCCCAAGCAATGAATGTATGTAACTAAACATGATGATTTTGGTACTCCTTTCCCTGCTTTCCTTTCCAAATCTTTTTAGCCCTAGTTACCTCTCCTCTCCAGTTACCTTTCTTTGCAGCATTTGATCTCTTGTAGAATTTTTACATTCTTATTTGTTACTTGTAATATTGACTAGAATTTATTTATTTTTTTCTGAAAATTTT 1342 0.4225 MEDLKKRKLDKIANDDFTSKEELRFLVEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFITYKNMESTQQALRAPSKLIDGRLAVCNLACEGLSGTSSAPDLTLRKLYIGSLSPEVTSEMLLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAVDDLEKTLGGRNIVVKYADSHKGKTGQPPFSAGVVPMAGALSMTPGYMQPGKAHVSSGPPTNYSYPQSVAPYSASPYPNPPAAPSPYPTQGQIPYPPVSAKKDQHGFPPTQPVGMNNYPYYYPKQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00495 337 FunFam UBP1-associated protein 2C 142 240 - -
Pste5g00495 337 Gene3D - 142 241 IPR012677 -
Pste5g00495 337 FunFam UBP1-associated protein 2C-like 60 141 - -
Pste5g00495 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Pste5g00495 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 224 IPR000504 GO:0003723
Pste5g00495 337 SUPERFAMILY RNA-binding domain, RBD 150 245 IPR035979 GO:0003676
Pste5g00495 337 SUPERFAMILY RNA-binding domain, RBD 59 141 IPR035979 GO:0003676
Pste5g00495 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Pste5g00495 337 CDD RRM2_NsCP33_like 156 230 - -
Pste5g00495 337 PANTHER GEO13361P1-RELATED 47 142 - -
Pste5g00495 337 SMART rrm1_1 65 137 IPR000504 GO:0003723
Pste5g00495 337 SMART rrm1_1 156 228 IPR000504 GO:0003723
Pste5g00495 337 Gene3D - 55 141 IPR012677 -
Pste5g00495 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 132 IPR000504 GO:0003723
Pste5g00495 337 MobiDBLite consensus disorder prediction 288 305 - -
Pste5g00495 337 MobiDBLite consensus disorder prediction 288 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00495 Pste-Chr5 3222875 3227271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00495 147 267 C2H2 Transcription Factor Family AT2G19380 32.283 2.35e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00495 5 3222875 3227271 Pste5g00495 5 3222875 3227271 ECH