Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00490 AAGGGTGTGTTTGCTTCTCTGACTACACGCATACACACTCCTTCTCTCTTCTCTCTTCTCACTGTAAGTGTACCACACCCTGCACTCCCCACTGCCACTATGGCCCAGCGTCAACTCTCTCCTTTTCCCTACCCTTCCACCTCCTCTTTTGTCTTCCACTTTACTCTCCCACTACCACTCCCACTCACCCTTCTCACCTCTCCAATGAGTTCAGACGCTGCTGCCACCAAACTCTCCTCTTCTGAGTCCCTCAATGGTTTGAAATTTGGCCAAAAAATCTATTTTGAGGATGTGGGTCTTGCTACTCCAGCCACCTCTCTCACTTCTGCTTCTGCTTCCTCTTCCTCCTCCTCTTCTTCAAGGAAAGGAAGAGGTGGCTCTCTTCAGCCAGCTCAGCCTCCCAGGTGTCAAGTTGAAGGGTGCAAAGTAGATCTGAGTGATGCAAAAGCTTACTATTCCAGGCACAAGGTCTGTGGAATGCACTCTAAGTCCCCTACAGTCATTGTTGCTGGTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGCCACACGATGTTACTTATGCAATATTTGAGGATTGCTTCTGTAAAACAGGCTCAAGGAACATCTTATACTGCTAATATGCTATCTTATCCAATGCAAACTGCAAAGCATGCTCTCATAGTGTGCGGCACCGCAAGATGTGAAAATTATTGCATTTTATGGCAAAATACCACTGTTCTTCTAATATCTTGTTTCATAGCCTTGACCAGATTTCATCAGCTTCCTGAGTTTGATCAAGGGAAAAGAAGTTGCCGTAGGCGACTAGCTGGTCATAATGAACGTAGGAGAAAGCCCCCACCCAACTCCCTCTTAACCTCTCGCTATGCCAGACTTTCTTCATCTGCATTTGATAGCAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGACTTCATACCCAAAGCTTAGTCTGAGAAACTCACTTCCCACTCCTAGATCGTCCGAGCAAGCTCCTGGAAATCAAACCTCAACACTTAGCTGGCAGGGAAGCTCGGAGACACCATCGGACCTTTTCTTGCAAGGTTCGGTGGGTGGAACGAGCTTCACCAGTCCAGGACATCCTCCAGGGGAAAGTTACACTGGGGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCTAGTCTTGGATTGAATAACATGATAAATTTCAATGGAACACCCATGACACAACTAGCTACATCATCTCCTGGTGCATCAATCCATCAACTTCCACATACCTCGTGGTGTTTCAAGGACATTGATTCTGGTAACTGTTCGCCCGAGGTTGTCCCTGATCTAGGTCTGGGTCAAATTTCACAGCCTCTCAATACCCAACATCCTGGGGAGCTGGATTTGTCCCAACATGGAAGGAGGCATTATATGGATTTAGAACAGTCTAGGGCATATGAATCTGCTCATTGGTCGCTTTAATGTACTTGTTTTTTATCAGGTTTGTAATAACATGTAGCACAAACCTGCGGCTACTTTGTTACTTGCCTGACTGATAACTACTGCTTGTTTTGGTTTGTTGAAACTGATAAGCAAGGTGCATAGCCTTGCCTCATTTGTGGACTTTCAGGCACCAAATGAATCACCTGAGAGTGTGTTTTGTTACTGTCTTTATCATAGGCATGGTGTTTTTTTGTCATTGCTGTCACCTCTGGGATTATTTGTAATTGAGAGGATGGCCTCTTTGTTGTTTGCTACTATTGCTAAGTTATTTAGTATTATCTTTTGTCTATCTGTCAATAAAGTGTTACACATGTTGATTGACTTCGATAACAAGGCATGTTTGGTTTTCAGTCAGGTGGTCCTCAACGTACACTTCAAAAGTAAAACTAAAAATTTTCTTGTTAGGTTTTCAGTTGAATCTTACTGTAAACTGGGTTGTATCAATTTTGTCTTAAAATTTTG 1968 0.4411 KGVFASLTTRIHTPSLFSLLTVSVPHPALPTATMAQRQLSPFPYPSTSSFVFHFTLPLPLPLTLLTSPMSSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPATSLTSASASSSSSSSSRKGRGGSLQPAQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSSHTMLLMQYLRIASVKQAQGTSYTANMLSYPMQTAKHALIVCGTARCENYCILWQNTTVLLISCFIALTRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPNSLLTSRYARLSSSAFDSSGRGGNFLMELTSYPKLSLRNSLPTPRSSEQAPGNQTSTLSWQGSSETPSDLFLQGSVGGTSFTSPGHPPGESYTGVTDSSCALSLLSSQTWGSRNTAPSLGLNNMINFNGTPMTQLATSSPGASIHQLPHTSWCFKDIDSGNCSPEVVPDLGLGQISQPLNTQHPGELDLSQHGRRHYMDLEQSRAYESAHWSL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00490 494 ProSiteProfiles Zinc finger SBP-type profile. 133 279 IPR004333 GO:0003677
Pste5g00490 494 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 69 423 IPR044817 GO:0003677
Pste5g00490 494 MobiDBLite consensus disorder prediction 108 126 - -
Pste5g00490 494 Gene3D - 126 266 IPR036893 GO:0003677|GO:0005634
Pste5g00490 494 SUPERFAMILY SBT domain 134 183 IPR036893 GO:0003677|GO:0005634
Pste5g00490 494 MobiDBLite consensus disorder prediction 108 135 - -
Pste5g00490 494 Pfam SBP domain 136 183 IPR004333 GO:0003677
Pste5g00490 494 Pfam SBP domain 250 278 IPR004333 GO:0003677
Pste5g00490 494 MobiDBLite consensus disorder prediction 318 376 - -
Pste5g00490 494 SUPERFAMILY SBT domain 250 284 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00490 Pste-Chr5 3186379 3190639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00490 250 494 SBP-box Gene Family AT2G42200 41.392 5.59e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste5g00490 SBP 1.1e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00490 5 3186379 3190639 Pste5g00490 5 3186379 3190639 ECH
Pste5g00490 5 3186379 3190639 Pste4g02941 4 20833625 20838475 PCT