Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00488 ATCCCGAACTCGAAGAGCTCAGAAAGCAACCACGGCTCATTGCATTCTCGTCCGACCAGTGCAACCATAGGGGTCTCTTCTACCGCACTAGATGAGCGTCCACAAGTCCCGCCCTTTAATTCTGCATCGCTTATGGATCCTGTGGTATTGCCTTCCGTGAACTATGACAATACAGAGGAACCATCCATAAGAAATTTTTCCTTGAGAAGCATATCCACCGGAAGGACGAGAATTTACACAATAGCAGAGCTTCAGTTGGCTACTAATTGCTTCAATGAAGCCAACGTTCTGGGAAAGGGATCTCTTGGCCCTGTTTATAGAGCTAAATTTCCGGATGGCGAAATTTTGGCCGTGAAGCAGATAAACATGGGGGGCCTCTCTTTCAGAGAAGAAGAAAAGTTCCTGGACGTGATGTGCACAGTTTCCCGACTGAAGCACCCCCACATCGTAACACTCAATGGTTACTGTTTAGAGCGCGGAAAGCATCTTCTTATTTACGATTACATTGGAAATTTCACTCTAAACGATGCTCTTCACAATGGGGCATACAAACCACTGTCGTGGGTCCAACGCCTCCGGATTGCTCTTGGTGTTACTCAGGCTCTGGACTATTTGCACTCAACGTTCTGGCCTCCCGTGGCCCATGGCAACTTGAAAGCTGTCAATGTTCTACTGGATGAAAATTTGATGCCTCGAGTTTGTGACTGTAGCTTGGCTATTTTGAGATCATTGAGTATCAATCAAGTTGAAATTCCGAAGTTTGATAACAATCCTCCTAAGTATGCCCATTGCAGGAATAGGTTCATTGATGGTTTTGGTGACTGTTGGAAACAGGCTAATGAGTTTACCATCGGAGAGATAGGCTACGTTGCACCAGATCATGGTCAACCAGGAACCAGCAGCAGAAAGAGAGACGTTTTTGCCCTTGGGGTATTGCTTCTGGAACTTTTAACCGGAAGGAAACCTTTCGATGGAGCCAGGCCAAGGGAGGAACAATATCTGGTGAAATGGGCTCCACCCATGCTTCCTTATAGAGCGAGTTTGGAACAGCTGGTAGATCCCCGAATGGAAAGAACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGTATACAGCCTGTAAGGCAACTCCGTCCCCCAGTGTCCGAAGTTGTGGAGTCTCTTGAATCTTTATACCAAAAGTTTGACATTGAAAAGAGCGATGTAGCAGATGGTACTGAACTTGATCCATTTGAGAGGTCTTTCCACTCGACCAACATATGCTTTATGGGTTCTCCTACCGCAGTGAGCCATGCATCAGCATCC 1320 0.4629 IPNSKSSESNHGSLHSRPTSATIGVSSTALDERPQVPPFNSASLMDPVVLPSVNYDNTEEPSIRNFSLRSISTGRTRIYTIAELQLATNCFNEANVLGKGSLGPVYRAKFPDGEILAVKQINMGGLSFREEEKFLDVMCTVSRLKHPHIVTLNGYCLERGKHLLIYDYIGNFTLNDALHNGAYKPLSWVQRLRIALGVTQALDYLHSTFWPPVAHGNLKAVNVLLDENLMPRVCDCSLAILRSLSINQVEIPKFDNNPPKYAHCRNRFIDGFGDCWKQANEFTIGEIGYVAPDHGQPGTSSRKRDVFALGVLLLELLTGRKPFDGARPREEQYLVKWAPPMLPYRASLEQLVDPRMERTFSSKALSRYADIISLCIQPVRQLRPPVSEVVESLESLYQKFDIEKSDVADGTELDPFERSFHSTNICFMGSPTAVSHASAS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00488 440 Pfam Protein kinase domain 92 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g00488 440 SUPERFAMILY Protein kinase-like (PK-like) 64 394 IPR011009 -
Pste5g00488 440 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 56 168 - -
Pste5g00488 440 Gene3D Phosphorylase Kinase; domain 1 55 168 - -
Pste5g00488 440 ProSiteProfiles Protein kinase domain profile. 91 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g00488 440 Gene3D Transferase(Phosphotransferase) domain 1 170 414 - -
Pste5g00488 440 MobiDBLite consensus disorder prediction 1 21 - -
Pste5g00488 440 PANTHER OS01G0253100 PROTEIN 62 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00488 Pste-Chr5 3178296 3180497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00488 29 432 Strubbelig Receptor Gene Family AT5G06820 49.877 1.92e-120 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pste5g00488 Pkinase 1.4e-27 CL0016