Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00452 ATGGATCCCAAGGGCTCAAAGCAGCCACAGGCACAGGAGGTGGTACCAAACTTCCTTAGCCTCCCCCAACAACAACAACAACAAGGTAATAACAACAACAACAACATGGGTGAGAACAAGCCAGCAGAGGTTAAGGATTTCCAGATAGTGGTTGCTGAGAAGGATGAGAGCAAGAAGCAGTTGGCACCAAAGAGGAGTTCCAACAAGGACAGGCACACAAAGGTTGAGGGTAGGGGAAGGAGGATAAGGATGCCTGCTCTGTGTGCAGCTAGAATCTTCCAGTTGACCAGAGAATTGGGTCACAAATCTGATGGGGAAACCATCCAGTGGCTTCTTCAGCAGGCTGAGCCATCTATAATAGCTGCAACTGGGACTGGCACAATCCCAGCATCTGCTATGGCTGCTGCTGGCAACACAGTTTCACCACAAGGGGCCTCTCTTTCATCAGGTTTGCACCAAAAGATTGATGAATTGGGAGGGGCCAATATGGGGACAGGGAGCAGTAGGACCAGTTGGCAAATGGTTGGGGGGAATTTGGGGAGACCCCATGTGGCCACAGGCCTATGGCCCCCCCATGTCAGTGGATTTGGATTTCAGACATCATCTGGTCCATCTAATGCCTCCTTAGGCACTGAGAGTTCAAATTACCTGCAAAAGATGTTCCCTCACTATGACTTGACTGCTGCTGCTGCCACCAACATGGGTCACATGAGTTTCACCTCAATTTTGGGTGGTGGGGGTGCTCAGCAGATGCCTGGTTTGGAGCTGGGCTTGTCTCAGGATGGGCATATTGGGGTGTTAAATCCACAGGCCTTGAACCAGATTTATCAACAGATGGGTGGGCAGGCTGGGAGAGTGCATCAGCAGCAGCAGCATCAACAACAACAACATCAGCAAACTCCTGCTAAGGATGATTCTCAAGGCTCAGGACAGTATACTCAAGTCTCCAGATACAGGTGGAATTGCATGGCCAGATGGCTTGGCTGCTTTGCTCTGGCCTTAAACTATTGTTTAATTCAGAGGTGTGTTGATTATTTTGTTCTTCTTTAGGTCAGGATGGAGTGCTGATCGGTTTGTTTGTGAATTTGATGATATAGTTTCATAATCATATTTGTCAAATTTCATACTGGATCTGGTATTAGTACTTTATCATCTGGGAAATTTTAATATTTGTGTGGGACAGCACTTGAGAATTACATCTGTGAATTTGTCAACTAGCACTGCTTCTGCGTATAAATTGCTTTCTTGTTACCATTGGAGTGGTTTACTATCTCTTTACACACAACTTTTCTGTCTTCCTTCGAAATTTATCACTTGGGGGGATCTTTCCATTTCTAAACAAATTGTTTTTTACCATCTTACAATGGTACACGATTC 1377 0.4604 MDPKGSKQPQAQEVVPNFLSLPQQQQQQGNNNNNNMGENKPAEVKDFQIVVAEKDESKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASAMAAAGNTVSPQGASLSSGLHQKIDELGGANMGTGSSRTSWQMVGGNLGRPHVATGLWPPHVSGFGFQTSSGPSNASLGTESSNYLQKMFPHYDLTAAAATNMGHMSFTSILGGGGAQQMPGLELGLSQDGHIGVLNPQALNQIYQQMGGQAGRVHQQQQHQQQQHQQTPAKDDSQGSGQYTQVSRYRWNCMARWLGCFALALNYCLIQRCVDYFVLL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00452 349 MobiDBLite consensus disorder prediction 47 78 - -
Pste5g00452 349 Pfam TCP family transcription factor 67 168 IPR017887 -
Pste5g00452 349 MobiDBLite consensus disorder prediction 10 39 - -
Pste5g00452 349 MobiDBLite consensus disorder prediction 283 310 - -
Pste5g00452 349 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 296 IPR005333 GO:0003700
Pste5g00452 349 ProSiteProfiles TCP domain profile. 68 122 IPR017887 -
Pste5g00452 349 MobiDBLite consensus disorder prediction 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00452 Pste-Chr5 2955345 2957033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00452 1 311 TCP Transcription Factor Family AT3G27010 52.410 1.89e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pste5g00452 TCP 1.9e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00452 5 2955345 2957033 Pste5g00452 5 2955345 2957033 ECH