LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00451	ATGAATGAGGGACTAATGAGCAGCAAAGTAAAAGTGGATCCAAGAAGGCATGGCAAGGTGTCACTATCTTCAGAGGCATCGAAGGAGAAAGAGAAAGAGGACACAATAGGAGAGCCAGAACTTGGTGCATATGCATCTTGGTCTTCGGAAACTCACATGTCGTCTACAATGGTTTATGGTTTTACTCAGGTTATGGAAACTACCAATCCAAACCCACATATGCCACAATCAACCTCCTTTCCCAATTTCTCAACTTCTGTGGTCATAGACCAATCTCAACTTCCTCCAGATCAAGGTGAGGAAAAGGTGACAAGGAAGGCACACTACAGAGGAGTGAGACAGAGACCATGGAGAAAATGGGCAGCAGAAATCCGTGACCCAAAAAAAGCAGCAAGAGTGTGGCTTGGAACCTTTGAAACAGCTGAGGAAGCAGCCCTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCTAAACTTAATTTCCCTGAAAGAGTTTATCAAGACGCAGCCTCTGCCTCTGCCCCTCCCTCACTCTCACTCTCCACACATCACCACCAAGTCTTCCCAAATCTATTTCAATATGCTCAGATTCTTTCAAGTGATGAAGCACACTTCCCTTATTACACATCCCATCTTTTCAATCAACCACAGCAACCTTCTCCTTCTCAATTCTCTACCACTTTTTCTTCTTCCTCATCCCAACAACAATATCATCATCACTCAAACCACTAA	741	0.4399	MNEGLMSSKVKVDPRRHGKVSLSSEASKEKEKEDTIGEPELGAYASWSSETHMSSTMVYGFTQVMETTNPNPHMPQSTSFPNFSTSVVIDQSQLPPDQGEEKVTRKAHYRGVRQRPWRKWAAEIRDPKKAARVWLGTFETAEEAALAYDKAALKFKGTKAKLNFPERVYQDAASASAPPSLSLSTHHHQVFPNLFQYAQILSSDEAHFPYYTSHLFNQPQQPSPSQFSTTFSSSSSQQQYHHHSNH	246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00451	246	SUPERFAMILY	DNA-binding domain	108	166	IPR016177	GO:0003677
	Pste5g00451	246	Pfam	AP2 domain	108	157	IPR001471	GO:0003700\|GO:0006355
	Pste5g00451	246	ProSiteProfiles	AP2/ERF domain profile.	108	165	IPR001471	GO:0003700\|GO:0006355
	Pste5g00451	246	MobiDBLite	consensus disorder prediction	219	246	-	-
	Pste5g00451	246	PANTHER	DNA-BINDING DOMAIN	55	223	IPR044808	GO:0003700\|GO:0009873
	Pste5g00451	246	MobiDBLite	consensus disorder prediction	1	43	-	-
	Pste5g00451	246	FunFam	Ethylene-responsive transcription factor 2	107	166	-	-
	Pste5g00451	246	CDD	AP2	107	166	IPR001471	GO:0003700\|GO:0006355
	Pste5g00451	246	SMART	rav1_2	108	171	IPR001471	GO:0003700\|GO:0006355
	Pste5g00451	246	Gene3D	AP2/ERF domain	107	168	IPR036955	GO:0003700\|GO:0006355
	Pste5g00451	246	PRINTS	Ethylene responsive element binding protein signature	109	120	IPR001471	GO:0003700\|GO:0006355
	Pste5g00451	246	PRINTS	Ethylene responsive element binding protein signature	131	147	IPR001471	GO:0003700\|GO:0006355
	Pste5g00451	246	MobiDBLite	consensus disorder prediction	9	38	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00451	Pste-Chr5	2948709	2961214	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00451	90	216	AP2-EREBP Transcription Factor Family	AT5G13330	57.143	2.51e-43	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pste5g00451		AP2	9.3e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g00451	5	2948709	2961214	Pste2g00225	2	1282192	1284212	ECH
	Pste5g00451	5	2948709	2961214	Pste5g00451	5	2948709	2961214	ECH
	Pste3g01324	3	8275559	8278199	Pste5g00451	5	2948709	2961214	ECH
	Pste2g00225	2	1282192	1284212	Pste5g00451	5	2948709	2961214	ECH
	Pste5g00451	5	2948709	2961214	Pste9g00985	9	6348727	6351425	PCT
	Pste9g00660	9	3351930	3354287	Pste5g00451	5	2948709	2961214	PCT