Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00439 AGGAGAAGAAGAAGAAGAGGAGAAGAAGAAGAAGAAGCAGAAGCAGAAGCAGCAGCCACACTAATAGTAGTGAGACCCACACCAACACCAACCCCAACCCCAACCCCACCCTCGTCTCCAATCAAAATGCAATTCGCCAAGCTCGATGATTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTAAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGACTTGGGGAGGCCTATGATGGAGACATTGCATTTGCTAGTGCGCTAGAAACTTTTGGTGGTGGGCATAATGACCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCTTAAGAGAAATCGGGACATACAAGGAAGTTCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTACAAGAGGTCAAGGAAGCACGAAAACGCTTTGACAAGGCTAGCCTTATATATGACCAGACTCGTGAAAGGTTTCTGTCACTAAGAAAAGGCACAAAAACTGATGTAGCTACTGCCCTAGAAGAGGTGGAGCTTCATAGTGCAAGATCTACATTTGAACAAGCTCGGTTTAATCTGGTTACTGCATTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAATTATTGCACCAAATGGAGCCATATATTAACCAGGTTTTGACTTATGCTCAGCAATCAAGAGAGAGGTCCAATTATGAGCAGGCAGCACTAAATGAAAGAATGCAAGAGTACAAACGTCAGATTGATCGGGAGAGTAGGTGGGCTTCAAATGGTTCTAACGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAATGCAGCAAATCATCTGGGTCTAGTAGTCAACATTCTGGCCAGAGGAATAGTTCTGAACTTGGTTCCGGACTTTTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACAGTGAACCTACTTACATCAACAATCAAAGTAGATGCTGACCAATCAGATTTGCGGTTTTGCTTCCGGATCATTTCACCAACAAAAAACTACACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCCTCATTACTGAGTTCTCAGATTCCTGAAAGGATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGCTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTTGAAGAATGTGCCACAGATAGAAGTCTTGTTTCCGCGCATCCAGAGCGTCCATCAAGAAGTTTGCAACAGCAGCGATCCTGCACTAAAAGTGAGAAGCCAATTGATGTGCTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCTCCTGAACCTGATTGGGCGTCACTAAATCTCGGTGTTCTTGTTTGCATAGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGTTTATTTCAGTCTCTTGGAAATACTTTTGCCAACTCGGTCTGGGAGGAAATATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTTAAGTAAGTCCGATAAACCACTGATGTTCTTCATCACCAAACCTTGTCAATCTGATTCTCTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTATGCTGAGAAGCTGTTTGTTCGAAAGCCAAAGGACAATCAATACCGTCTCTTGGTAGCACAACAGATCTGGGAGGCTGTTCATGCTAATGATAAAAAGGCTGTATACCGATACATTGTTAATTCTGATGTTGATGTTAATGTTGTTTATGAGCAAACGTGCAACAGCTCCTTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACTAGCCATGATCACAGCTCTACTTTAGCAGGGAACACATTGGACTGGTCCTCTCCTAAAGAAGGGCAGTTTGTGGATAATCTAGATGGGTGCACCCTACTTCACCTCGCATGTGAAACTGCAGATATTGGTATGGTGGAACTCCTACTACAGTATGGTGCAAATGTTAATGCTACTGATTCAAGAGGTCAAACACCACTACATCGCAGTATTCTCAAAGGCAGATCTACGTTTGCAAGATTATTGCTTTCAAGGGGAGCTGATCCTCGAGCTGTGGATGAGCAGGGAAGAACCCCTATTGAACTTGCTGCAGAGTCAAATGCCGGTGACAGAGAAGTCCATGCCCCATTGACTGATTCTAATGGATGAGAGTGATAGGCAAAGATCTCGGAATATATTAAATATATAAAAATATGGAAGATTGGATTATGTAAATTTGTATTTCATAAATTGAAAAGCTGGTTTTTTGAAGTAAATGTCACTAGTGTGAAGGATTAAGGGAGAGAGGTAGGTTGAAATGCCTGCCCCTTAGTCATCTTGTGCAAAATAGTGCTAAGATCTGTAATGTAAAACGGCCACATTGGTCTAAGTAAAAGAGTTATGCATATGCTGCACTAGTAGCGCCCAGGCAGCACTTTGTAATATGATGTTTGTGTATTTTTTTTTTTTTTTTAATTTTGAGGTGAAGTTATCAGGCTAGGGTTTTGTGTATGTTGTGTACATTTGTTTTTGTGAAGGTGTTGTGGCTGTAATGCAGATTTTTTTTTTATTTATTTTTGGGATTACTTGGTGGGACATGTGCTGAGGATGTCATGTCCCTAGTTCTCTAATGTTCCGATGTATCCATATTGATAAGAAAGAGAGAATATTTTTAAAGGCAAAA 3112 0.4142 RRRRRRGEEEEEAEAEAAATLIVVRPTPTPTPTPTPPSSPIKMQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTDVATALEEVELHSARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHHRSTSESSSFESSDFDHSAVEECATDRSLVSAHPERPSRSLQQQRSCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEEILQSRSAFQVDLVPTGLSKSDKPLMFFITKPCQSDSLSVKEKFIHAKYAEKLFVRKPKDNQYRLLVAQQIWEAVHANDKKAVYRYIVNSDVDVNVVYEQTCNSSLTLAKVMLLQEQTSHDHSSTLAGNTLDWSSPKEGQFVDNLDGCTLLHLACETADIGMVELLLQYGANVNATDSRGQTPLHRSILKGRSTFARLLLSRGADPRAVDEQGRTPIELAAESNAGDREVHAPLTDSNG 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00439 865 SUPERFAMILY ArfGap/RecO-like zinc finger 543 683 IPR037278 -
Pste5g00439 865 PANTHER CENTAURIN/ARF 43 861 IPR045258 GO:0005096
Pste5g00439 865 ProSiteProfiles ARF GTPase-activating proteins domain profile. 543 688 IPR001164 GO:0005096
Pste5g00439 865 SUPERFAMILY BAR/IMD domain-like 48 358 IPR027267 -
Pste5g00439 865 Gene3D - 688 857 IPR036770 -
Pste5g00439 865 CDD BAR_SFC_plant 56 258 IPR035670 -
Pste5g00439 865 MobiDBLite consensus disorder prediction 832 865 - -
Pste5g00439 865 ProSiteProfiles Ankyrin repeat region circular profile. 772 803 - -
Pste5g00439 865 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 525 689 - -
Pste5g00439 865 MobiDBLite consensus disorder prediction 1 39 - -
Pste5g00439 865 CDD PH_ACAP 338 475 - -
Pste5g00439 865 ProSiteProfiles Ankyrin repeat profile. 805 837 IPR002110 GO:0005515
Pste5g00439 865 Gene3D Arf GTPase activating protein 524 687 IPR038508 -
Pste5g00439 865 MobiDBLite consensus disorder prediction 292 313 - -
Pste5g00439 865 ProSiteProfiles PH domain profile. 335 471 IPR001849 -
Pste5g00439 865 MobiDBLite consensus disorder prediction 481 504 - -
Pste5g00439 865 SMART ANK_2a 772 801 IPR002110 GO:0005515
Pste5g00439 865 SMART ANK_2a 805 834 IPR002110 GO:0005515
Pste5g00439 865 SMART PH_update 336 473 IPR001849 -
Pste5g00439 865 SUPERFAMILY Ankyrin repeat 702 850 IPR036770 -
Pste5g00439 865 ProSiteProfiles Ankyrin repeat region circular profile. 805 837 - -
Pste5g00439 865 Coils Coil 270 290 - -
Pste5g00439 865 SUPERFAMILY PH domain-like 336 487 - -
Pste5g00439 865 Pfam Putative GTPase activating protein for Arf 546 683 IPR001164 GO:0005096
Pste5g00439 865 SMART arf_gap_3 543 688 IPR001164 GO:0005096
Pste5g00439 865 Gene3D Arfaptin homology (AH) domain/BAR domain 45 294 IPR027267 -
Pste5g00439 865 Pfam PH domain 337 470 IPR001849 -
Pste5g00439 865 SMART 5bar 53 261 IPR004148 GO:0005515|GO:0005737
Pste5g00439 865 ProSiteProfiles Ankyrin repeat profile. 772 804 IPR002110 GO:0005515
Pste5g00439 865 MobiDBLite consensus disorder prediction 296 312 - -
Pste5g00439 865 MobiDBLite consensus disorder prediction 490 504 - -
Pste5g00439 865 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 46 294 - -
Pste5g00439 865 CDD ArfGap 546 675 - -
Pste5g00439 865 Gene3D - 328 481 IPR011993 -
Pste5g00439 865 Pfam BAR domain of APPL family 48 275 IPR004148 GO:0005515|GO:0005737
Pste5g00439 865 MobiDBLite consensus disorder prediction 519 539 - -
Pste5g00439 865 Pfam Ankyrin repeats (many copies) 792 846 IPR002110 GO:0005515
Pste5g00439 865 PRINTS HIV Rev interacting protein signature 597 618 IPR001164 GO:0005096
Pste5g00439 865 PRINTS HIV Rev interacting protein signature 555 574 IPR001164 GO:0005096
Pste5g00439 865 PRINTS HIV Rev interacting protein signature 574 591 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00439 Pste-Chr5 2878073 2890945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00439 555 682 C2H2 Transcription Factor Family AT4G21160 41.860 2.64e-20 91.7