Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00435 CCTCATATTCACAAGATCTTGCTTGGTGTGGCTCTTTATTTTCAAAAAGCAAAATAATCAATTTTCTGAAACTGCACCAAGTCATCTTTTTTATTTATCTCCACGCCAACATATATCTGGTTGTCCTTTTCACAGCTTCGGTGTTTATCTGTTCCGCTTCTACACAACACCAACCCCTCAACCTTCCCTTTAAGTCCCTTATTGAATTTTGTGACCAAATTTTCCTTTTTTTTTCTTTCCCATTTGGGTTACTTCCTTCTGAGTTCTCACACAACGCGATCCTTTTCATTTTCCGTCTCCCATAATGATTCTCTAGCCTCTCATATCTCCTTGACTTGTTCCTTTTCCAGTAGCAAAACATGGATTCGAATTCCCCTTACAAAGTTCACCAGCAGCAGCACCAACCCAATTCTGGGTTGCTCCGCTTTCGCTCTGCCCCTAGTTCAGTTCTCGCGAATTTCAAACAAGGAGAAGCTAGCAATAATGAGAACCAGTGGGATAGTTCTGAACCACTTTTTAGATTCTTGAATTCCGGGGACAACCACGATACCACGTCGCCTACCCTACGAGAATTCGTGGATAATAAGGCTTCTAATAATAAGAAAACGGGGAAAGAATCATCATCTCCTCTGAGTCGCATGAATTCCCAAGAGGGTTATAGTACTTCTCTGTTACCCACTCGGTACCCGAGGCATGACTCTAGTGTAACTGTAACTTCATCCGTCATGGTGGATTGTATGGGAATGGATCATAGTGCTAAAAGCTTTACTTCCAATATTCTCAGGCAGAGTAGCTTCCCTGCTTCCCATTTCTCTAACAACATCTCCTTTCACAACGGGTTTGATACTATGAAAGGTGTTGGAAATTATGGTGGGGTTAATGGCAATGATGGTGAATCTAGTCTATCTATGAACAGAATGAAGAATCAGATTAGCTTCTCATCAACAAGTCCTTCTTCTTCCTTGGGAATGTTATCACAAACCTCCAAAATGGGTGTTGCGGAAGGGAGACAAGGAGGAAGCAATGGTGATGGTCGATATTATGGCCCTGGATTCTCTTATGCTTCTTGGAATGAGACTTCAAACCCGAAAAGGCAGCGAAATAGTAACGATGAGTTTCTTTCTAATGCTCAGAATGGAGAGCTGGCAAATCAAGATCATACACCTTCGCATCATTTGAGTTTGCCAAGAACATCATCGGAGGTGTTTGCTATGGATAATTTGCTTCAGTTCACGGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCCCGAAGCATTGCCGAAAGGGTGAGAAGAACTCGGATTAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAGAAGCAAACTAGCACAGCAGAGATGTTGGATTTGGCTGTAGACTACATAAAAAATCTTCAGAAACAATTCAAGACTCTGAGTGAAAAACGGGCTAAATGCAAATGTATAAACACGCAGAAGTCAGAAGAAACAGATCAGGTTGCGTGAGTTTCTTTTGTACAGGTAATGAAAGGAACTATGCAAACATGGGTACTGGATAGGACCCGAGTTTTATATTTTGACGTGCTGAAATTTCTATAGAAAAAAGCTAATATAAGATTCAGAAAGCCAGCTTTTAACTCTTTGTCACTGCATTGTGTATTTGGAGTTAACGGAGGTTTCAACCACACAGACAATAAAAAAAATAGTTTAATTTGTAATTTTGTATATAAAAATTCTAATGAATTAATTTTAGCGATATTATTTTTA 1775 0.3989 MDSNSPYKVHQQQHQPNSGLLRFRSAPSSVLANFKQGEASNNENQWDSSEPLFRFLNSGDNHDTTSPTLREFVDNKASNNKKTGKESSSPLSRMNSQEGYSTSLLPTRYPRHDSSVTVTSSVMVDCMGMDHSAKSFTSNILRQSSFPASHFSNNISFHNGFDTMKGVGNYGGVNGNDGESSLSMNRMKNQISFSSTSPSSSLGMLSQTSKMGVAEGRQGGSNGDGRYYGPGFSYASWNETSNPKRQRNSNDEFLSNAQNGELANQDHTPSHHLSLPRTSSEVFAMDNLLQFTDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQKQFKTLSEKRAKCKCINTQKSEETDQVA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00435 384 Pfam Helix-loop-helix DNA-binding domain 311 356 IPR011598 GO:0046983
Pste5g00435 384 MobiDBLite consensus disorder prediction 1 74 - -
Pste5g00435 384 Coils Coil 318 338 - -
Pste5g00435 384 MobiDBLite consensus disorder prediction 191 215 - -
Pste5g00435 384 MobiDBLite consensus disorder prediction 191 225 - -
Pste5g00435 384 FunFam Transcription factor bHLH130 family 306 375 - -
Pste5g00435 384 Gene3D - 307 379 IPR036638 GO:0046983
Pste5g00435 384 SMART finulus 311 361 IPR011598 GO:0046983
Pste5g00435 384 CDD bHLH_AtbHLH_like 310 363 IPR045239 -
Pste5g00435 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Pste5g00435 384 MobiDBLite consensus disorder prediction 1 112 - -
Pste5g00435 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 371 IPR036638 GO:0046983
Pste5g00435 384 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 375 - -
Pste5g00435 384 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00435 Pste-Chr5 2870547 2873275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00435 1 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 43.077 5.97e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g00435 HLH 3.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00435 5 2870547 2873275 Pste5g00435 5 2870547 2873275 ECH
Pste5g00435 5 2870547 2873275 Pste4g00058 4 664583 667699 ECH
Pste5g00435 5 2870547 2873275 Pste4g02971 4 21160189 21163887 PCT