Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00428 GAAGGACGGTCAGAGAAATTCAAACGCCACATCTCCTCGAGAACAAAACCAATTTCAAAAACAGCACCATTCTCATTCTCCTTCTCCTTCTGTACATGGCCAAGTGGGGTTAAACAAACAACAAACAACATCAACACACAGCAAAACCAGCTCATGCTTCAGTTTGTCTAACCTTGTTGTGTGTGGAGTGTTGTGTTTGACACATTAACTATTGTCGATTCTCCAGCCAACAATGCCAATGCATAATGTTTTTCTTCTTCTTTTCTTGCTGACTCGTGGAACCAGCTGTCTCAACTCCGACGGTCTGTCCCTGCTGGCTCTGAAAGCCGCCGTGGAGTGGGACCCGAGCGGCGTGCTGTCCAGCTGGTCGGAAAGAGACGCCACGGCATGCCAGTGGGCAGGCGTGTCATGCAGCGGCGACAAAGTGACTCAAATATCTCTTCCAAGAAAGAACCTGACAGGCTACATCCCCTCCGAACTGGGTTTTCTCACCTCCCTAAAAAGACTTAGTCTTCCCTACAACAACTTCTCCAAAGCCATTCCTCCACCTCTCTTCAACGCCACATCACTCATAGTCCTCGACCTCTCTCACAACTCTCTCTCCGGTTCCCTCCCTAGAGAGCTTCACTCTCTCAAGTTGCTCCGCCACTTGGACCTCTCCTCCAACTCCCTCAACGCTTCCATACCCGACACCCTCTCCGATCTCACCTCCCTCGCCGGAACGCTCAACCTTTCCTTCAACCACTTCTCCGGCGGCATTCCCCCCACCCTCGGAAACCTCCCTGTTGCCGTCAGCCTTGACCTCCGCAACAACAATCTCACCGGCAAAATTCCTCAGCTGGGTTCCCTGTTAAACCAGGGTCCCACCGCGTTTTCCGGCAACCCTGGACTCTGTGGTTTCCCGTTGCAGACTGCGTGCCCCGAAGCCCAAAAGCCTGGGATTTTCTCTAACCCTGAAGAGGGTTTACCTCAGAACCCCAATGCACTTCGCCCTCAAGCCCACCAAGATACAGTCAAGCAACACGCTGCCGGCTCCGTCGCTGTTCTTGTCATCTCCGGTCTCTCCGTCGCGGTTGGCGCTGTTTCGCTCTCTCTTTGGGTTTTCCGGCGACGCTGGGGCCCCGAGGATGGGAAATTGGATGCTCAAAAATTGGAGGATGACGTGGAAGGGGGAGAGGGACAAGAGGGTAAATTTGTCGTGGTGGATGAAGGGTTTGATTTGGAGTTGGAGGATTTGCTCAGGGCTTCTGCGTATGTTGTTGGGAAGAGCAGGAGTGGCATTCTTTACAAGGTTGTCGGTGTCGGAAAAGGGTCTTCCGCGGCGGCGGCGGTGGTGGCTGTTCGCCGACTCAGCGAAGGCGATGCCACCTGGCGGTTCAAGGAGTTTGAATCTGAGGTTGAGGCCATCGCAAGGGTTCGTCATCCCAATGTTGTTCCGTTGAGGGCTTATTACTATGCGCATGATGAGAAGCTGCTCATCACTGATTTCATTCGCAATGGAAGCTTGCACGCTGCGTTACACGGTGGACCTTCCAATTCGTTACCACCGTTGTCATGGGCAACAAGGTTAAAAATTGCTCAAGAATCAGCAAGGGGCTTGATGTATATACATGAATTCAGTGGACGAAAATACATCCATGGCAACATAAAGTCAACAAAAATCTTACTAGATGATGACCTCCACCCTTATGTGTCAGGTTTTGGACTTACTCGGCTTGGTTTGGGCCCGTCAAAGTCTACTACAATGGCACCAAAACGGCACAACTTAAACCAATCTACTATAACTACTGCAATTAGTTCAAAGGTTTCTGCTTCGTTTCACCACTACTTGGCTCCTGAGGTGCGAATGGCTGGTGCCAAGTTCACTCAGAAATGTGATGTATATTCTTTTGGTATAGTGCTGTTAGAACTTTTGACAGGTAAGATGCCTGATTTTGGACCAGAAAATGATGATAAGGTGCTAGAGAGTTTTGTAAGGAAAGCCTTCAGGGAGGAGCAGCCATTGTCTGATATCATAGACCCTGCACTTATCCCTGAGGTTTATGCTAAAAAACAGGTTATTGCTGCATTCCATATTGCTCTGAACTGCACTGAACTTGATCCAGAGTTGCGCCCTAGAATGAAAACCGTGTCAGAGAGCCTTGATCACATCTAAATACAGGGAAAACCTAGTGTGAACCATGTAAAGTTTTGGTTCTTGTGCTTGACTCTGTATTTTTCTTTCTTTGATGCCTTGAGTGGGGTTGAGTTTGTACACTCAAGGGCATGCAGATCAGTAGATGTATCTCTCCATTTCTCAATGGAAATTGTTTCCTTTCATCTTCAAC 2327 0.4929 MPMHNVFLLLFLLTRGTSCLNSDGLSLLALKAAVEWDPSGVLSSWSERDATACQWAGVSCSGDKVTQISLPRKNLTGYIPSELGFLTSLKRLSLPYNNFSKAIPPPLFNATSLIVLDLSHNSLSGSLPRELHSLKLLRHLDLSSNSLNASIPDTLSDLTSLAGTLNLSFNHFSGGIPPTLGNLPVAVSLDLRNNNLTGKIPQLGSLLNQGPTAFSGNPGLCGFPLQTACPEAQKPGIFSNPEEGLPQNPNALRPQAHQDTVKQHAAGSVAVLVISGLSVAVGAVSLSLWVFRRRWGPEDGKLDAQKLEDDVEGGEGQEGKFVVVDEGFDLELEDLLRASAYVVGKSRSGILYKVVGVGKGSSAAAAVVAVRRLSEGDATWRFKEFESEVEAIARVRHPNVVPLRAYYYAHDEKLLITDFIRNGSLHAALHGGPSNSLPPLSWATRLKIAQESARGLMYIHEFSGRKYIHGNIKSTKILLDDDLHPYVSGFGLTRLGLGPSKSTTMAPKRHNLNQSTITTAISSKVSASFHHYLAPEVRMAGAKFTQKCDVYSFGIVLLELLTGKMPDFGPENDDKVLESFVRKAFREEQPLSDIIDPALIPEVYAKKQVIAAFHIALNCTELDPELRPRMKTVSESLDHI 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00428 640 PRINTS Leucine-rich repeat signature 134 147 - -
Pste5g00428 640 PRINTS Leucine-rich repeat signature 113 126 - -
Pste5g00428 640 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Pste5g00428 640 FunFam Leucine-rich repeat receptor-like kinase 25 136 - -
Pste5g00428 640 ProSiteProfiles Protein kinase domain profile. 337 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g00428 640 FunFam Leucine-rich repeat receptor-like protein kinase 137 231 - -
Pste5g00428 640 Gene3D Ribonuclease Inhibitor 20 162 IPR032675 -
Pste5g00428 640 Gene3D Phosphorylase Kinase; domain 1 324 419 - -
Pste5g00428 640 SUPERFAMILY L domain-like 18 226 - -
Pste5g00428 640 Gene3D Ribonuclease Inhibitor 163 231 IPR032675 -
Pste5g00428 640 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 639 IPR046959 -
Pste5g00428 640 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Pste5g00428 640 Pfam Protein tyrosine and serine/threonine kinase 360 636 IPR001245 GO:0004672|GO:0006468
Pste5g00428 640 SUPERFAMILY Protein kinase-like (PK-like) 342 636 IPR011009 -
Pste5g00428 640 Gene3D Transferase(Phosphotransferase) domain 1 420 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00428 Pste-Chr5 2824594 2828333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00428 20 640 Receptor kinase-like Gene Family AT3G57830 58.529 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pste5g00428 PK_Tyr_Ser-Thr 1.2e-25 CL0016