Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00416 CGTACGTGTATGACTCAACAGTAGTAGAGTAACCGTAGCGTAGCAACGTTGCTTTCGCAGTACTTCAAATGGCTGAGAAGCAATCTCAGAGACAGAATCACAGAACTGGAGAGAAAGAGAAAGATAGATAGAGAGAGAAAGAAAGAAAGAAATTGATTGACCGCCATTGAAGCACTGCTTCTGCTACCTCACTCGCAACAAACACATTCTTCGTTCCTCATTTTCACAATCCGGTTCAACACTGTTACGCTTCAGAACTCCTCCAATTCAGATAATTCAAGTTCAATCCGGTTCAATTGGATCTTCTGATTTGCGTTTTGTTCGCTCAATGGAGCAAGCTCCAGGAGGATTGCGCGAATCCGTGCACCACGGCGCCTTACTCGAGTCCATTCAATTCAACGAGGAAATTCAGGGACTCATGGCGCCGGCGCCGGCGCCGGAAAACGCTAGCTCCTTCACCGCACTGCTCGAACTCCCGCCGACGCAGGCGGTGGAGCTCCTTCACTCGCCGGAATCCGACGGCTCCCGTAAACCGCCTAATTCCCATGTCAGCGCGAATCAGAAACCCTATTTGCTCAACTCTTTCGGTACCAATTTGACCTTCCCTTCCAACGCCGCCTTAATCGAACGCGCCGCGAAGTTCTCTGTGTTCGCCGGAGAGAACTTGCCGCCTCAGGGGGAGGTACGTCTGGTCACGGCCGGGTCCGGTTCGAATATGGATAGGGTGAAGAACGAACCGCAGGAGACCGATTCGAACCCGTGCTCTTCGCAGGGGTGCACTTTGGATTCCGTGGTTGAGAACAAGAATCAGAGGACCGCGAAGAGAAAGGAGCGAGAGAAGAAGGTTAAAGGAGGCTCGAAGAAGAGTAAGAGCGTCGCCGATGAGACCTCCGGCGACGGCGAGAAGCTTCCATACGTCCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACAGCAATGGTTCTGGATGAAATCATTAACCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTGAACCCAAGAATTGATTTTAGCCTTGACAGCTTATTGGCCACTGATGGGGCATCTGTAATGGATAGTAACTTACCTAGCATGGTGGCACCTCTCATGTGGCCAGAAATCCCATTCAATGGCAATAGGCAGCATTATCGGCAACAGTGGCAATTCGATGCATTCCACCAACCACTATGGGAGAGGGAAGAAGTCAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCAAACTCAGCGTCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGAAAGCGTAGAGAAGTCGTACCAGTAGCTAATAGCCTAGTAGTGTATATATCAAATATAGTATTCGCAGTTAGCAGTGATTTGAGATGTCCCAACATTTAGCAGGGTTTCCATGTCTTCTATTTGTCAGAGGCGGTTGGAAACCTGGATTTTCTTTGGCCAGAAAGGAAGATGAATTGGCATGCTATTCTTATATAATATTATTATTACTCTGTATACTAACTATAGGGGTTATTGAATCCATGAGGTGATTGATTCAAGATTGTAAAATCACAGAACGGACTGTTACTGAACTATCATGGGAGTGAGTTTCTTTGTTCATTAAATATTACTCAGAAGATTGGCTCTTTGTGAGGAATTACCTAAACAAGCTACTTTAATTCTAAATTACTTGCTGAATTTTCTTTTTCTTAGGTACTTTCATAGTTTGACAAAACTAGTTGAAAAGTTAGATAAAAGTTGAAAAACTAGTTTAAGAGTGTGTTTAATTTGCCATTTTAGCTCTGTTTAGATAATAAAAATCTAGAAGTTTTTTT 1959 0.4533 MEQAPGGLRESVHHGALLESIQFNEEIQGLMAPAPAPENASSFTALLELPPTQAVELLHSPESDGSRKPPNSHVSANQKPYLLNSFGTNLTFPSNAALIERAAKFSVFAGENLPPQGEVRLVTAGSGSNMDRVKNEPQETDSNPCSSQGCTLDSVVENKNQRTAKRKEREKKVKGGSKKSKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASVMDSNLPSMVAPLMWPEIPFNGNRQHYRQQWQFDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00416 365 MobiDBLite consensus disorder prediction 128 158 - -
Pste5g00416 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 255 IPR011598 GO:0046983
Pste5g00416 365 MobiDBLite consensus disorder prediction 119 191 - -
Pste5g00416 365 FunFam transcription factor bHLH48-like isoform X1 202 274 - -
Pste5g00416 365 Pfam Helix-loop-helix DNA-binding domain 209 256 IPR011598 GO:0046983
Pste5g00416 365 Gene3D - 202 274 IPR036638 GO:0046983
Pste5g00416 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 274 IPR036638 GO:0046983
Pste5g00416 365 CDD bHLH_AtBPE_like 195 280 - -
Pste5g00416 365 MobiDBLite consensus disorder prediction 175 191 - -
Pste5g00416 365 Coils Coil 245 265 - -
Pste5g00416 365 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 89 349 IPR024097 GO:0006355
Pste5g00416 365 SMART finulus 211 261 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00416 Pste-Chr5 2748856 2761284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00416 18 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.547 4.93e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste5g00416 HLH 2.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00416 5 2748856 2761284 Pste5g00416 5 2748856 2761284 ECH
Pste5g00416 5 2748856 2761284 Pste4g02986 4 21270083 21276119 PCT