LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00406	CCGCCTCAAAATTCCACCTTAGACCACCCTCTTATTCCAATTAATCTACCCTTATGATAATAAATAAAGCTCAATTTTCACGACACACACTTGTAGAATTTTCGTGCCGTTTACGACACCATGGCCACTTCACTGTATATATATCCCTTTGGACTTTCTTTTCTCTTTCCTCTCTCACATTCGGTGTATGTATCCACTAATTTAGCCACGTTAACATTAAGCGCCGCCCCCACCATTTATATTTCCTCTTCATCTTTTTACCACAACCACTTTTTTCTCTTCCAAAAACTCTCTTCTTCAATTCCCTAACCTACACACTTTTTTTTTCTCTGCCTTATATATAGAGACAAAGAAAATTAAATTGGGTTTTGGGTTTGGTTTGGTTTGATTTCGATGGAGAATTATTCCATGTTGTTCCCTTGTCCCAATTCTTCGAGCTACCCGGTTTCAACCAGTGGTGTAGGAAGCTCTCAGCATGGTAATTTTGGTGGTCAAAGCTCCAATGCGTTTCTTGGTCTAAGGGCTAGTAATGAGAGTAGTGATCATGAGAAGAGAGGAGAGGGTGGTGGCATTAATGTGAGTGATGAGTTAGGTGGTTCAGGAACTGATGGTAACAAAAAGAAAGGGGAGAAGAAGGTTAGAAAGCCTAGATATGCTTTTCAAACAAGGAGCCAGGTTGATATTCTTGATGATGGCTATCGATGGAGGAAGTATGGCCAAAAAGCTGTTAAGAACAACAAGTTTCCAAGGAGCTACTACAGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTGCAACGCTTAACCAAAGACGAAGGGGTAGTGGTGACTACTTATGAGGGAGTGCACACTCACCCAATTGAGAAAACAACAGATAACTTTGAACACATTTTGAGTCAGATGCAAATATACACTCCCTTTTGAAGCTGCTTCAATTCTCCACAAAAATTACTGGCACATGATGAATGTCTTCTGCCAGTTACGTCAATTGGGAACTAATTGTAGTACTGTATTAGTTCCCCCCTTTGATACAAAAATAAAATGATGTCAATAGAAGTAAGATCTAGTTTGCCTAAACTCTTCTTAGACAATCTTCTTTTTTTATTTCTTTCTTTCTTTCCTTTTTTTTTTTTGTTTGGAATATTAGGTTAATTATATCGTAAATTCAGCTGTCAAGTTCAGTGCTGCTGAAAATATATACAAGTGAATATCCTTTATTCC	1224	0.3856	MENYSMLFPCPNSSSYPVSTSGVGSSQHGNFGGQSSNAFLGLRASNESSDHEKRGEGGGINVSDELGGSGTDGNKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF	177

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00406	177	SMART	WRKY_cls	98	157	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g00406	177	Pfam	WRKY DNA -binding domain	99	156	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g00406	177	FunFam	WRKY transcription factor 57	84	158	-	-
	Pste5g00406	177	Gene3D	WRKY domain	75	157	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g00406	177	SUPERFAMILY	WRKY DNA-binding domain	90	157	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g00406	177	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	30	160	IPR044810	GO:0003700
	Pste5g00406	177	MobiDBLite	consensus disorder prediction	1	86	-	-
	Pste5g00406	177	MobiDBLite	consensus disorder prediction	1	44	-	-
	Pste5g00406	177	ProSiteProfiles	WRKY domain profile.	93	158	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g00406	Pste-Chr5	2677838	2680096	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00406	39	177	WRKY Transcription Factor Family	AT5G13080	65.468	5.29e-59	179

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste5g00406		WRKY	1.6e-26	CL0274