Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00386 CTCAACATCAAGAACTCATTCAATGAGAGTTTGGTGAGCTACTTTTACATTCTAACTAGTCCTTTATCCCCTAAGAGAAACACAAAGATGGGTCTTGTACATTCTGTGCCCATTTTCTTGGAGACTTATCTGCTGCTGTGAGAATTTAAGAGACATGAGATTTTGATATAACTACGTGTGTTAGGTGAAATTTCTCTCTTTTTATAATGTGGAAGCCTTGTGTTATTTTCTTTTTTCTCCTTATCTTACAGAAAACAACAAAAGTCCTTGAATTGACAATAATTTCTTTTCAACCCCATTGAGGGCCAAGTTGCTTTGAGGTTGAGGTGACGTTCATGTCTATAATCTTTCAGAATATCTTTCAATATCCCTCTCTTTTTAATTGTTTTTCTAATCTTTAAATTTATGCATTTATTCTGTTGGCTTCCTCTGAGAACCCAATTCTGATTTCCCTCTTATGTGTGTGATTGACCCCTTTATCCTGTTTTTGTTCCCAACTCCCAAGTCAAAGTCTTCTTGAGCTTGTGGTGATAAAGGTAACACAAGGGATTCATCATTCAAGTTCTGAGTCCTGTGTGAGTGCCTTACAGGTTTGGCTTTGGCATCTTAAAAGGGACATAAAGGAAGATAGTTTGTGGGAGCAACTGTTGGTTATGGATTGGGACGGGAAAGAGTTTGCTTGGGATCCACGTGGGTTGGAGCTAGCAAATGGTGAAGGCCAGAACAATGAAGCAAATTCAGTGGATTTGAGGCTTGGTGAGGGAAAATTAGCCCCAGATGTTGGTACTGACACAAAAGACTCAAAAACTGTGTCTTCACCATCTGGGTCATCAAAAAGGTCCCGCCTTCAGAATGGATCACAGAATATGTGTTGTTCTGTTGATGGATGCAATTCTGACCTCAGTGACTGCAGAGAGTATCATAGGCGCCACAGGGTCTGTGAAAAGCACTCCAAAACCCCCGTTGTGTTGGTGGGGGGAAAACAACAGCGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAACGGCTTGATGGGCATAACCGGCGCAGGAGGAAACCTCAGCCACCCTCTCTATTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGGCCTAGAATCCTACACTTTGGTAGCCCTGAGACGTATGCCAGCCCTATTATGAGAAACATGTGGCCTACCACGGGCAAAACTGGAGCTGAATCTGGTTATGATCCTCCCCGGTTTTTGTACAGAATTGACAAGCATAAGCAAGATAAGGGACATCCTCTTTGTCAAGAAAACGACCCTAAAGTAGGCAATGGTATTGAAGCAATGCATGGAACTCCCATTTGTCAGCCTATTCATGGCACCATCACCCCATCACCGGATAGAAAGAGTAGCCGAAAGCTCTCTTCTGATGCAAAACCTGGTTCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAGTCACAAAGTCCAGAATTGAGCATGGTGCAATCTAGCATCACCTGTCCAATTCAATCTCCATCAGGATCTGGGCATTTTGATGCCATGAATGAGTATACATCCTCAGAAACAGCGAAAGAGAAGCCCAGTGGATTGTTGGTTCTCGATGCCAACACAACCAACCTTCATTACAATGCAATGCTTCCAATAGGGCTCGATGGATTGGTTGAAAATGATGACCCACTTACACTTCCCTTTTTGTGGGAGTAAGTAGCTAATTGGTTATGTCTTTGTTGGGAAATTTATGGATTGAAAACCTTCTGTGTGTACTCCAATAATGGAAGCTTAAACTTGTTGAAGCTTTCAGTAAGGGTCCTTTGTTGCTGTCAATTCAAATTGTGGTAGCACAATTGACTTTACTCCGGAGGATGAAATGCATTGTATGCCATCAACTATGTTATTTCATTTGTGATGAGATCAGTTTGAACAGTTCGGAA 1972 0.4219 MDWDGKEFAWDPRGLELANGEGQNNEANSVDLRLGEGKLAPDVGTDTKDSKTVSSPSGSSKRSRLQNGSQNMCCSVDGCNSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPETYASPIMRNMWPTTGKTGAESGYDPPRFLYRIDKHKQDKGHPLCQENDPKVGNGIEAMHGTPICQPIHGTITPSPDRKSSRKLSSDAKPGSFDSGCALYLLSTLQSQSPELSMVQSSITCPIQSPSGSGHFDAMNEYTSSETAKEKPSGLLVLDANTTNLHYNAMLPIGLDGLVENDDPLTLPFLWE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00386 363 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 300 IPR044817 GO:0003677
Pste5g00386 363 MobiDBLite consensus disorder prediction 244 265 - -
Pste5g00386 363 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Pste5g00386 363 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Pste5g00386 363 MobiDBLite consensus disorder prediction 35 69 - -
Pste5g00386 363 Pfam SBP domain 74 147 IPR004333 GO:0003677
Pste5g00386 363 MobiDBLite consensus disorder prediction 47 69 - -
Pste5g00386 363 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Pste5g00386 363 FunFam Squamosa promoter-binding-like protein 14 65 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00386 Pste-Chr5 2556428 2560101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00386 74 193 SBP-box Gene Family AT5G50670 58.333 1.61e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste5g00386 SBP 1.2e-30 No_clan