Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00382 ATGGATAACCAAGTTACAGCTCTTGAAAGAGCAAGTTCTTTCGAATCCTGCAATCCTTTCTTCTTGTTAGTCATGCATCCTTCATACATTCGTCATGGTACTTTGAATGTACCATTTACGTTTGGTAGAACACATTTAGATTTGCAAAAGAGGAGAGGACCTATCAACCTTCAGGTGTTAAATGGGAGAGTTTGGCCTGCAAATATCCTAATCCAAAAAGACAAAACTATAACAAAATTTAGATTCTCTGGTGGATGGAAGGCATTTTCCAAGCACAATAACTTGAAAGTTGATGATGTTTGCATCTTTGAGCTCATCAAAAGAACTAAACTAACCTTCTTGGTTCATATCTTTAGAGAGACAAAGAGTTCAAATTGTTTAACATCTAAAGGTAGGATTGATGTTTAAATTTCTACTAAAAACAATGCTTATGTCTAATCCATGTATATTTCTCTATCTGGTATGAATCTGAACAAATGAGAACTCTTTGTCAAAGACACAGAAAGAAAAGAAACCACTGTTTCCAG 527 0.3472 MDNQVTALERASSFESCNPFFLLVMHPSYIRHGTLNVPFTFGRTHLDLQKRRGPINLQVLNGRVWPANILIQKDKTITKFRFSGGWKAFSKHNNLKVDDVCIFELIKRTKLTFLVHIFRETKSSNCLTSKGRIDV 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00382 135 CDD B3_DNA 19 119 IPR003340 GO:0003677
Pste5g00382 135 Pfam B3 DNA binding domain 20 120 IPR003340 GO:0003677
Pste5g00382 135 SMART B3_2 20 121 IPR003340 GO:0003677
Pste5g00382 135 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 123 IPR044837 -
Pste5g00382 135 Gene3D - 1 122 IPR015300 -
Pste5g00382 135 ProSiteProfiles B3 DNA-binding domain profile. 20 121 IPR003340 GO:0003677
Pste5g00382 135 SUPERFAMILY DNA-binding pseudobarrel domain 14 119 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00382 Pste-Chr5 2532137 2532735 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00382 5 119 REM Transcription Factor Family AT1G49480 35.246 8.10e-15 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g00382 B3 1.8e-17 CL0405