Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00380 ATGTTTGTCAGTAAAAAAATCATTACTTGTGGAAAACCCTTCTGTGTGTTAGTTATTGCTCATCCACCCTCATTCATGGCTACCGGTTGTTCTCACAAATCTGATGCAAAGCAAATCCGCTTTTTCAAGATCATAACTGCTTCAAATCTCCATGAAGAAAAGCTGATGATTCCAATTAAGTTTGTGCGGAAATATGGAGAAGGCTTAACTAACACTGTATTTCTTAAGACTCCAAATGGTGCTCAGTGGAAATTGAAATTGGAAAAGAAAGATGGTAAAATATGGTTTCAAAAGGGCTGGAGAGAATTTGCAGAGTATCACTCTCTAGTTCATGGCCATCTTTTGATTTTCAGATTTGAAACAACTTCCCGTTTTCAGGTACACATATTTGATTTGAGTGCCTTAGAGATAGACTACCCTTCAAAGAGAACAGATGATAAAGTGTCCTCCAATATTCGAGGAAGTAAACCTCCAAATCAAGAAAATTTGGGGAAACACAGAACAAGTCAAAAGAGAAAAGATAAACCCTCATTAGAATTTCTTCAAAGATATAAACTGAGAAGTCGCAAGCGTGTTAAAGTTGACAACACGAAGATATTGCCAAAGGAGGCGTGGCATCATCCTGACACAAAGTGCAAAGGTGTAAGATTATGA 654 0.3731 MFVSKKIITCGKPFCVLVIAHPPSFMATGCSHKSDAKQIRFFKIITASNLHEEKLMIPIKFVRKYGEGLTNTVFLKTPNGAQWKLKLEKKDGKIWFQKGWREFAEYHSLVHGHLLIFRFETTSRFQVHIFDLSALEIDYPSKRTDDKVSSNIRGSKPPNQENLGKHRTSQKRKDKPSLEFLQRYKLRSRKRVKVDNTKILPKEAWHHPDTKCKGVRL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00380 217 MobiDBLite consensus disorder prediction 144 174 - -
Pste5g00380 217 ProSiteProfiles B3 DNA-binding domain profile. 40 133 IPR003340 GO:0003677
Pste5g00380 217 Gene3D - 32 134 IPR015300 -
Pste5g00380 217 SMART B3_2 41 133 IPR003340 GO:0003677
Pste5g00380 217 Pfam B3 DNA binding domain 41 131 IPR003340 GO:0003677
Pste5g00380 217 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Pste5g00380 217 SUPERFAMILY DNA-binding pseudobarrel domain 35 133 IPR015300 -
Pste5g00380 217 CDD B3_DNA 40 131 IPR003340 GO:0003677
Pste5g00380 217 PANTHER B3 DOMAIN-CONTAINING 32 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00380 Pste-Chr5 2530408 2531909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00380 40 147 B3 DNA Binding Superfamily AT1G49475 46.296 9.77e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g00380 B3 1.3e-17 CL0405