Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00379 GTGCACACTCTCTCTAGACTTTGTTTTGGGTAAGCTAAGTGATCATCCTTTAAATTTTCTTGGTGGTGATATATTCTACTTTACCTGAGTCTACCCTCTCTTCTCTCTCTCCAATTCAGTCTTCTGATGAGGTAGTTTTGTGTCATAATTGTGGAATGTAGCTTTACTCATCTTTCATGTGAAGCCTCTTGACGGTTGCTGCAACCCATTGAATAGTCCCCAAAATTCATTCTCGTAGGATACATTTACTTTGCCCAATTAATGCCATTCAGCCTAGCGGGTATCTTCAATTACAGCATTTGGATGAAAAATAAGGGTAGAAAGGGTTGGTAGTAGAATTCACACTTACACATACTTGGCCATAAAGAATCTTTGCTTTCCCTTTCTTTTTCTTTAACAAGTTAGTAGTAGTAGCAAATCAGGATCTACTGCTTCACTGCCTCCTCACCCTTTGTCTTTTAGCTTCTGGAATTTTCCATGGAGACAGACAACGGTGGTGACACCAAGTCCAAAAAGATTGAAGACTATGAAGTCATAGAGCAAATTGGAAGGGGAGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTTAAAAAGATTCGGTTGGCCAAGCAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTGATTGCAAAATTGAATAACCCATATATTGTAGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCAGAGAACATAAAGAAAGCTCGCGGATCATTTTTTCCTGAGGAGAAGCTCTGCAAATGGCTAACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTAGGCTTGGTGACTTTGGTCTGGCAAAGCGACTTAATGCAGAGGACCTTGCTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTTGCTGATATACCTTATGGTTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCATTTCGTGCTCCCGACATGGCTGGACTTATCAATAAAATAAACAGATCCTCTATTTCTCCACTGCCTATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCAGAACATAGGCCAACCGCAGCAGAATTATTAAGGCATCCACTTTTACAACCTTATGTTCTTCGCTGTCATAATGCATCGTCTAATTTTCTTCCAGTGTATCCCATAGTTAATTCAAAGGATAAAACAAAAAGATCTAACAAATCTAGTGGCGGAAAGGACCATAAGGATAAAGAAGCAAGCTTAGTAAATCGATTGGAACGGATTCATCCGATTGAGGGAAATGGAGATATACTGATAGGTAATCTTCCTAACGATGCAGTAACTATCTCGACCAGTGCAGAAGACAAGCTTGAGACCAGGATGGTTGATCTTACCAGCTACATAGGGGAATCTTCTACTAGTATTAGTGGTTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTATGTGCAAGGAGGACTTTAAAGGTAGACCTGCAAGGGAAATGACTACCAATGAGATCTCTTCAAAGAGTACACAAGATTCTCTGCATGAAGAGCGAAGATTTGCTGCTAAACATTTTCATAAGTTAGAAGGAGATGACAAAAATGCAGTGACCACAGAAGTTGAAGATGCTTCTTGCAATGGAGGTTTGGATAATGCTGAAGCACACAGAGAAGAGTTGAACCTTGAGGACTCTGGTAAATCAACAATGTCCAGTGCAGGCAGTAGCAGCACTGATAAAGATAAGTCCATCAATGAAGAAAGATCATCATTAATTGTGCATCCTATTCAGGTTGAAAATCACAGTGAATCTGGAAACTGCTTGAAGAAAAGTGAAAACTCCGATGTATTTACAGGAGACTCACATATGAACTGCTTGACATCTGACAATAATGATGCACATCCAATCGAGGATGGTGACACAGCAAACAAACACATTCTTTGCTCCACGCATAAAGGAGACGATAATGCAGTGGAGGTTGATTGGAAACCAAACGGTGTTTCGTTGAGTGTAATAACTGAAGTAGATGGTGATGAAACAATCAAGACTCCATTGGATAGTCCTTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTAAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTACTAAGACCATTTGGGAAAGAAGCTGTCTCATCAAGAGAAACAGCAATATGGTTGGCAAAAAGCCTCATATCAGCCCAAAAGTTTAATCCTGAGACATAGTTACAAGAGGTTATGGTCATAAATTTATACGTTTTGTAAGAAATGTGCTTTTCAAATGTCACATGAGTTTGTTCCTTTCGAGATTGTTGCTTGGTTGAAGATTGGAGACTGGAAGATAGCATGCCACATGTTCTTTCATGGTCTAAGTAAATGGTTATAGTAAATTAATTAAATTATTTTTGTTAGGTTGGATAGTCATTTGTGCTTGTTTTCCAGCTGTGTATGGGCCATTGATTTATGTAAATTTTTTTACTTTCCCTTTTCCGAACTGCAAAATAACCATGCACTTAATTGGAGCTTGATG 2734 0.3994 METDNGGDTKSKKIEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMAENIKKARGSFFPEEKLCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNFLPVYPIVNSKDKTKRSNKSSGGKDHKDKEASLVNRLERIHPIEGNGDILIGNLPNDAVTISTSAEDKLETRMVDLTSYIGESSTSISGSKDGSTTSESTICSMCKEDFKGRPAREMTTNEISSKSTQDSLHEERRFAAKHFHKLEGDDKNAVTTEVEDASCNGGLDNAEAHREELNLEDSGKSTMSSAGSSSTDKDKSINEERSSLIVHPIQVENHSESGNCLKKSENSDVFTGDSHMNCLTSDNNDAHPIEDGDTANKHILCSTHKGDDNAVEVDWKPNGVSLSVITEVDGDETIKTPLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISAQKFNPET 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00379 650 Gene3D Transferase(Phosphotransferase) domain 1 99 325 - -
Pste5g00379 650 MobiDBLite consensus disorder prediction 396 417 - -
Pste5g00379 650 SUPERFAMILY Protein kinase-like (PK-like) 14 300 IPR011009 -
Pste5g00379 650 MobiDBLite consensus disorder prediction 465 479 - -
Pste5g00379 650 MobiDBLite consensus disorder prediction 460 484 - -
Pste5g00379 650 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g00379 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Pste5g00379 650 Gene3D Phosphorylase Kinase; domain 1 2 96 - -
Pste5g00379 650 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g00379 650 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 15 600 - -
Pste5g00379 650 FunFam Serine/threonine-protein kinase Nek6 1 96 - -
Pste5g00379 650 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Pste5g00379 650 FunFam serine/threonine-protein kinase Nek6 isoform X2 97 285 - -
Pste5g00379 650 MobiDBLite consensus disorder prediction 296 317 - -
Pste5g00379 650 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g00379 650 CDD STKc_Nek 16 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00379 Pste-Chr5 2522335 2528050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00379 10 272 MAP Kinase Kinase Kinase AT3G13530 32.453 1.91e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pste5g00379 Pkinase 3.4e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00379 5 2522335 2528050 Pste5g00379 5 2522335 2528050 ECH
Pste5g00379 5 2522335 2528050 Pste4g03006 4 21444206 21446783 PCT