LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g00378	ATGAAATGGGGAGGTAGGCCCCATTGGCATGGAGACGCGACGGCACGGCAAGGCAAATATCAACAGACATTTGGTTCACGCAACGAGAAAAATTCATTCCAACCTCCAATGGATTATTCATCTTGGATCTCTGAGTTGAGAGGCTCCGCCAATAGGTTCCTCTCCCAATACGAGCCACTCGCTCTGGTTCTCGCTCCTCTCCTCTCTCTCCTCCTCGCCCATGCTCTTCGTTCCTTCTTCCACCACGGACTCAAACCCACGCTCCTAGGGTTTCTAATTAACTCCGTCAAACTCCTCCCTGGAGTCAAGACATACATAGATGCTCAAAAACAAAAGGTTGTGGATAAGTTGCAATCTGATAGTAAATCTAAAAGAGAAGCTTGGAAAACTGTGTTGCCAAGTACAGGATTAGGGACATCAGTCGTTGAGAAATTGAGAGAAGAGAAAATAAATGATGCAGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGGCATTTTGCTCTGATAAATGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTAGATGTATTCAAGAGTGTTGCACGCTTTGAGGCTGAAGTGGTTGCTATGACAGCGGCACTTCTTGGAAGTAAGGAAAAGAGTTCTGGAGGACAAATTTGTGGCAACATGACATCAGGCGGGACTGAAAGTATATTATTAGCTGTCAAATCATCGCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCAGAAATGATTATTCCTGAGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTATGGCGTGTACCAGTTAACAAGAATTTTCAAGCAGATGTGAAAGCGACTCGACGTCATATTAACAAAAATACCATCTTGATTGTTGGATCTGCTCCCGGGTTTCCTCACGGAATAATTGACCCCATCGAAGAACTTGGCCATCTAGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCGTTTGCTCGTGAGCTTGGGTATCAGATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCAGTGGATGTACATAAATACGGGTTAGCTCCCAAGGGAACAAGTGTAGTTCTTTATAGAAACCATGAAATCAGAAAGAATCTGAATTATCATTTCTTGTCTCTTGCACATAGCATGATTGATATCCTAGGCCAGACATTAAAATGGTTCCACACTCCAGTTCAAGAGTTCTTCATCTCTTTCTCTTCCTTAGGGAATCTTGAAGAGTTGTTTTTACTGATTAGTGTCAATTTCACAGTTACTGAGTGGTCTGGGGGGTTGTATGTGTCTCCAAGCATAGCTGGAAGCAGGCCTGGAAGTCTTATTGCTGGTGCATGGGCTGCTATGATGTCTCTAGGAAAAGAAGGTTACTTGAAAAATACAAAAGCAGTTATGGAAGGGTCAAGAAGAATACAGAAAGGCATAGAGGAGATCACTGAGTTGTTTATTGTTGGAAAACCCGACATGACGATCGTGGCTTTTGGATCTGATGTTCTGAATATATTTGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATTTGTGTGACACTGCAACATGTGCCAATTGTTGAAGAGTTTCTGAAGGATTTGAAGGAATCTGTGAAAAGCGTGAAAGATAATCCAGGTCCAATAAGTGGAGGCCTAGCACCTATATATGGGGCTGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGACAGTACCTGCTAATGGCGTTCAACATTTGTACCAGGCAACATGTACTGTAATGGACCTTTACCAAATAATATTCCATTTTATTGTGCATTCTTTCATATTTATATTTAGGAGAAATTTAAAGGGTGAAATGAAAAAATAAGAGCGTGTTTGTTAGTGTGTGATTGTACGTTTAAGAGAGCGTGTCATTTTGGATTCACGTCTGAGCATTATCATTATGAAATCATGGGGGGGTTAAGTTGGTTGCTGTTTCGCAATCTTGCTCTTGACATCGAGGACAGTAATAGTCTCACCAACTATGGTGGCTCTGAAACTTCCGGAACCAAAATAATGCCCTTATGATAGACTGTTAAAAACAAAATGTACGACAATCATCAGTGTAATGTTGATCCACAAATATTGATACCGACATTATTTTTGTCTATTCTATTTACTAGACACGTGTCAC	2290	0.4135	MKWGGRPHWHGDATARQGKYQQTFGSRNEKNSFQPPMDYSSWISELRGSANRFLSQYEPLALVLAPLLSLLLAHALRSFFHHGLKPTLLGFLINSVKLLPGVKTYIDAQKQKVVDKLQSDSKSKREAWKTVLPSTGLGTSVVEKLREEKINDAVWQGKCSGTVYIGGSESDGHFALINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKEKSSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKNFQADVKATRRHINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYQIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKNLNYHFLSLAHSMIDILGQTLKWFHTPVQEFFISFSSLGNLEELFLLISVNFTVTEWSGGLYVSPSIAGSRPGSLIAGAWAAMMSLGKEGYLKNTKAVMEGSRRIQKGIEEITELFIVGKPDMTIVAFGSDVLNIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPIVEEFLKDLKESVKSVKDNPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDSTC	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g00378	618	Gene3D	-	202	482	IPR015421	GO:0003824
	Pste5g00378	618	Gene3D	-	573	618	-	-
	Pste5g00378	618	FunFam	Sphingosine-1-phosphate lyase 1	471	581	-	-
	Pste5g00378	618	Gene3D	Aspartate Aminotransferase, domain 1	483	572	IPR015422	GO:0003824
	Pste5g00378	618	PANTHER	-	90	618	-	-
	Pste5g00378	618	MobiDBLite	consensus disorder prediction	1	32	-	-
	Pste5g00378	618	SUPERFAMILY	PLP-dependent transferases	105	582	IPR015424	-
	Pste5g00378	618	MobiDBLite	consensus disorder prediction	16	32	-	-
	Pste5g00378	618	Pfam	Pyridoxal-dependent decarboxylase conserved domain	195	418	IPR002129	GO:0016830\|GO:0019752\|GO:0030170
	Pste5g00378	618	FunFam	Sphingosine-1-phosphate lyase 1	578	617	-	-
	Pste5g00378	618	FunFam	sphingosine-1-phosphate lyase 1	170	407	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g00378	186	576	Calmodulin-binding Proteins	AT5G17330	24.515	1.02e-17	84.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g00378	5	2522282	2534760	Pste5g00378	5	2522282	2534760	ECH