Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00373 CTCTCTTTCTCTCTCCACCGTTCACTTCCTTCAGCCATCTTGTACTCTCTCTATCTCTCTATAAAAGCAAAGGCAACTAGCCAAAAACTGTTCCCACTCTCTCATCAACACTTTTTCCAACCATGGCTGACCCCTATTCCAATTTTTTCTCTTCCTCACCCTTCTTCCGTTTCAATCACAACCCTCCCTATGTCCACCACAACTTTATCAACCACACCAAAGCCCACGACACCACCACCTTTTTCCACTACCACCACCAAACCTCCACTACCTTTTCTTCTTTGCCACCTTCTCCTCCTTTGAGAGAGGAACTACCCCTCTTGAGGCTCAGTCCTGCAAAACATGACGAGGAGGAGGAGGAAGACCTTTCTTGCACTGGCCCCATGGATTTGGAAGACAGGATCCCCAAAGAGGAAGAAGATGATGAAGATGCCACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTTCTCTCTTCTTCCTCAGAGATCACTCACAAACACCATGGAGATGGAGCTGCTGATGACTCTTCCGCTGCCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGAGGTACCCAACCAACAGGCATGCTGAGGCTTCCTTGCTATTGCTGTGCCCCGGGGTGCAGAAACAACATTGACCATCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACACTCCAAACGCATTACAAGAGGAAGCACGGGATTAAGCCTTTCATGTGTAGGAAATGCGGCAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGCATCTGTGGTTCCGATTTCAAGCACAAGAGGTCTCTTAAAGACCATATTAAGGCTTTCGGGAGTGGCCATGCAGCTTATGGAATTGATGGTTTTGAAGAAGAAGATGAGCCAGCATCTGAAGTAGAGCAGGATAATGATGATTCTACCCACTTTGGCTTCCTTCAGCACTATATATGCACCAAATTTAAATGGAAAGCCAATCTTTTCTTTAATCTCTCTTTTCTTTCTTCTGTTCGCAATATTAGCTAG 1220 0.4672 MADPYSNFFSSSPFFRFNHNPPYVHHNFINHTKAHDTTTFFHYHHQTSTTFSSLPPSPPLREELPLLRLSPAKHDEEEEEDLSCTGPMDLEDRIPKEEEDDEDATVTVALHIGLPSPSAAEMASVLSSSSEITHKHHGDGAADDSSAAFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTHFGFLQHYICTKFKWKANLFFNLSFLSSVRNIS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00373 365 FunFam Zinc finger protein WIP2 224 306 - -
Pste5g00373 365 SUPERFAMILY beta-beta-alpha zinc fingers 237 275 IPR036236 -
Pste5g00373 365 PANTHER ZINC FINGER PROTEIN WIP2 27 329 IPR043584 GO:0003700|GO:0010468
Pste5g00373 365 SMART c2h2final6 255 275 IPR013087 -
Pste5g00373 365 SMART c2h2final6 171 193 IPR013087 -
Pste5g00373 365 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Pste5g00373 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 275 IPR013087 -
Pste5g00373 365 MobiDBLite consensus disorder prediction 70 91 - -
Pste5g00373 365 Gene3D Classic Zinc Finger 170 193 - -
Pste5g00373 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Pste5g00373 365 Gene3D Classic Zinc Finger 218 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00373 Pste-Chr5 2467668 2470271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00373 1 329 C2H2 Transcription Factor Family AT3G57670 62.963 2.02e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g00373 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00373 5 2467668 2470271 Pste5g00373 5 2467668 2470271 ECH
Pste5g00373 5 2467668 2470271 Pste3g01421 3 8816210 8824531 ECH
Pste5g00373 5 2467668 2470271 Pste4g03011 4 21492098 21494529 PCT