Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00347 TGTTCAAAGTTCACTATCCCAATATATCAACCATGGATACTTGCAAGAAATCCCCCTTGAAGCCATGGAAGAAAGGGCCAACAAAGGGGAAAGGTGGCCCCCAGAATGCCTCATGTGAGTATCGAGGTGTTAGGCTGAGAACATGGGGCAAATGGGTTGCAGAGATAAGAGAGCCAAAGAAGAGAACCAGACTTTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGGCTCTATGGTCCAGATGCGTACCTTAATCTTCCCCACCTGCAACCGAGGTCCACTTTACCTATCACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAATTTCATTTCAATGTTTCCTTCCTGTGGATTACTCAATGTAAATGTTCAACCTAGTGTTCATTTAATTCATCAGAGGCTACAAGAGCTTAAGCAAAATTCAGTTTTAAGTCAATCCTCATCCAATTCATCCAATGAACCAAAGGCAAAAATTCAGACTGCAGCCAGCAAAAATCATGGAGAAAACCCTCCAGAAGATGCTCAACCATCATCAGAGGAGGTGCTTGGAGATGCTAAGGAGAAACCCCAGATAGATCTTCATGAGTTTCTTCAACAGCTGGGAATACTGAAAGAAGAAAGGCAGTCAGAAAGAACAGATAGCTCAGGAAGGTCAACAGTGCCTGAAGCTGTGTTGAGAGATGACAATGATCAACCAGTGTTTTCTGACAAGAGTGTCAACTGGGAGGCATTGATTGAGATGCATGGATTTGTAGATATTCAGGAATCAGAAGCCACCCAGCTTGAAGCATATGACCCAAATGATGACCTTACTTTCTCAACTTCCATTTGGAAATCACAAGGTTTTGATTCTCCAACTACTGTAGTCCTTTTTATGTCTGCAGAATTTCAATCTGTTAGCAGCAATGTAAGTAGGAAAGTAGTTAGAATAGAATACTACTACCGAGGAACAAGCTTATTTCAGCAGTTGTGTGACAGAAATAGAGAAAAGAATATCAGTCAT 1034 0.4236 MDTCKKSPLKPWKKGPTKGKGGPQNASCEYRGVRLRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTLPITPGKFKWFPSKNFISMFPSCGLLNVNVQPSVHLIHQRLQELKQNSVLSQSSSNSSNEPKAKIQTAASKNHGENPPEDAQPSSEEVLGDAKEKPQIDLHEFLQQLGILKEERQSERTDSSGRSTVPEAVLRDDNDQPVFSDKSVNWEALIEMHGFVDIQESEATQLEAYDPNDDLTFSTSIWKSQGFDSPTTVVLFMSAEFQSVSSNVSRKVVRIEYYYRGTSLFQQLCDRNREKNISH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00347 334 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Pste5g00347 334 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Pste5g00347 334 MobiDBLite consensus disorder prediction 141 186 - -
Pste5g00347 334 MobiDBLite consensus disorder prediction 204 232 - -
Pste5g00347 334 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Pste5g00347 334 MobiDBLite consensus disorder prediction 141 172 - -
Pste5g00347 334 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Pste5g00347 334 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 235 - -
Pste5g00347 334 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pste5g00347 334 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Pste5g00347 334 MobiDBLite consensus disorder prediction 1 26 - -
Pste5g00347 334 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Pste5g00347 334 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Pste5g00347 334 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00347 Pste-Chr5 2349496 2350606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00347 5 281 AP2-EREBP Transcription Factor Family AT3G57600 53.333 9.47e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste5g00347 AP2 9.3e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00347 5 2349496 2350606 Pste5g00347 5 2349496 2350606 ECH